8jcc_D : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	HUMAN HISTONE H2B VARIANT H2BFWT CRYO-EM STRUCTURE WITH 601 DNA SEQUENCE
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	8jcc_ABCDEFGH 8jcd_ABCDEFGH
redundant complexes	8jcd
links to other resources	NAKB PDIdb DNAproDB

  
  ------RA----          +-----------------------------6g0l_D    
                     +-18  
  IT----------       !  +-----------------------------3wkj_D    
                     !  
  ----RA------       !                               +1zla_C    
                     !                 +-------------4 
  ----RA----RA       !                 !             +6a5l_g    
                     !         +-------7 
  ----RT------       !         !       !              +7kbd_C    
                     !      +-12       +--------------1 
  ----RG------     -19      !  !                      +8ox0_C    
                     !  +--14  !  
  ----RG------       !  !   !  +----------------------5x0y_G    
                     !  !   !  
  ----RG------       !  !   +-----------------------8jla_C    
                     !  !  
  --------KG--       !  !                         +---7nkx_f    
                     !  !             +-----------5 
  ----RG------       !  !             !           +---7unc_a    
                     +-17             ! 
  ----RT------          !  +----------9                +7zs9_e    
                        !  !          ! +--------------2 
  ----RT------          !  !          ! !              +8grq_A    
                        !  !          +-8 
  ----RG------          !  !            !              +7ccr_A    
                        !  !            +--------------3 
  ----RT------          !  !                           +8hr1_E    
                        !  !  
  ----RC------          +-16                         +---7xyf_B    
                           !            +------------6 
  ----RG------             !        +--10            +---6iy2_A    
                           !        !   !  
  ----RC------             !     +-11   +----------------3kwq_E    
                           !     !  !  
  --KT--------   L         !  +-13  +--------------------7cvo_A    
                           !  !  !  
  ----RC------             +-15  +-----------------------4xzq_E    
                              !  
  ----RG------                +------------------------7y7i_E

home
updated Wed Dec 18 18:35:19 2024