8jkl_CD : 3D-footprint complex

structure name	IRF4 DNA-BINDING DOMAIN BOUND TO AN DNA CONTAINING GATA MOTIF
reference	Wang et al. Structure 31 1441 2023
source	Homo sapiens
experiment	X-ray (resolution=2.94, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	7oot_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8jkl_C interface=75,78,79,83, ngklrqwlidqidsgkypglvweneeksifripwkhagkqdynreedaalfkawalfkgkfregidkpdpptwkTrlRCalnKsndfeelversqldisdpykvyrivp > 8jkl_D interface=37,76,77,78,81, klrqwlidqidsgkypglvweneeksifripwkhagKqdynreedaalfkawalfkgkfregidkpdpptwktrlRCAlnKsndfeelversqldisdpykvyrivpe
interface signature	TRCK/KRCAK

Estimated binding specificities ?

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# IC=9.987 IC/col=0.908 n_of_columns=11

specificity:

A |   4   4  24   9   0   0   4  81   4   0  96
C |   7  84  24  76   0   0   4   7   4  96   0
G |   4   4  24   7  96  96   4   4   7   0   0
T |  81   4  24   4   0   0  84   4  81   0   0

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updated Thu Sep 12 03:50:10 2024