8jkl_CD : 3D-footprint complex

structure name	IRF4 DNA-BINDING DOMAIN BOUND TO AN DNA CONTAINING GATA MOTIF
reference	Wang et al. Structure 31 1441 2023
source	Homo sapiens
experiment	X-ray (resolution=2.94, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	7oot_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8jkl_C interface=75,78,79,83, ngklrqwlidqidsgkypglvweneeksifripwkhagkqdynreedaalfkawalfkgkfregidkpdpptwkTrlRCalnKsndfeelversqldisdpykvyrivp > 8jkl_D interface=37,76,77,78,81, klrqwlidqidsgkypglvweneeksifripwkhagKqdynreedaalfkawalfkgkfregidkpdpptwktrlRCAlnKsndfeelversqldisdpykvyrivpe
interface signature	TRCK/KRCAK

Estimated binding specificities ?

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# IC=9.733 IC/col=0.885 n_of_columns=11

specificity:

A |   0   0  84   4  82   0   6   6  24   4  82
C |   0   0   4   0   6  96  82   8  24   6   4
G |   0  96   4   4   4   0   4  78  24  82   4
T |  96   0   4  88   4   0   4   4  24   4   6

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updated Mon Dec 16 05:46:01 2024