8jkl_GH : 3D-footprint complex

structure name	IRF4 DNA-BINDING DOMAIN BOUND TO AN DNA CONTAINING GATA MOTIF
reference	Wang et al. Structure 31 1441 2023
source	Homo sapiens
experiment	X-ray (resolution=2.94, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	7oot_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8jkl_G interface=75,78,79,83, ngklrqwlidqidsgkypglvweneeksifripwkhagkqdynreedaalfkawalfkgkfregidkpdpptwkTrlRCalnKsndfeelvisdpykvyrivpe > 8jkl_H interface=2,38,77,78,79,82, gKlrqwlidqidsgkypglvweneeksifripwkhagKqdynreedaalfkawalfkgkfregidkpdpptwktrlRCAlnKsndfeelversqldisdpykvyrivp
interface signature	TRCK/KKRCAK

Estimated binding specificities ?

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# IC=11.329 IC/col=0.944 n_of_columns=12

specificity:

A |   0   0  96  12  65   0   3  12  65   0  96  86
C |   0   0   0  12  12  96  86   9  13   0   0   3
G |   0  96   0  12  10   0   4  65   9  96   0   4
T |  96   0   0  60   9   0   3  10   9   0   0   3

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updated Thu Sep 12 03:50:19 2024