8jkq_FH : 3D-footprint complex

structure name	T95R MUTANT IRF4 DNA-BINDING DOMAIN BOUND TO AN DNA CONTAINING GACA MOTIF
reference	Wang et al. Structure 31 1441 2023
source	Homo sapiens
experiment	X-ray (resolution=3.09, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	7oot_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8jkq_F interface=69,70,74, ngklrqwlidqidsgkypglvweneeksifripwkhagkqdynreedaalfkawalfkgkdpptwkrlRCalnKsndfeelversqldisdpykvyrivp > 8jkq_H interface=78,79,82, gklrqwlidqidsgkypglvweneeksifripwkhagkqdynreedaalfkawalfkgkfregidkpdpptwkrrlrCAlnKsndfeelversqldisdpykvyrivpe
interface signature	RCK/CAK

Estimated binding specificities ?

readout + contact

# IC=6.271 IC/col=0.570 n_of_columns=11

specificity:

A |   8  16  24  24  96   0  24  24  56   0  96
C |   8  16  24  24   0  96  24  24   8   0   0
G |   8  48  24  24   0   0  24  24  16  96   0
T |  72  16  24  24   0   0  24  24  16   0   0

scan!

home
updated Thu Sep 12 03:50:37 2024