8jks_CD : 3D-footprint complex

structure name	T95R MUTANT IRF4 DNA-BINDING DOMAIN BOUND TO AN DNA CONTAINING GAGA MOTIF
reference	Wang et al. Structure 31 1441 2023
source	Homo sapiens
experiment	X-ray (resolution=3.30, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	7oot_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8jks_C interface=75,78,79,83, ngklrqwlidqidsgkypglvweneeksifripwkhagkqdynreedaalfkawalfkgkfregidkpdpptwkRrlRCalnKsndfeelversqldisdpykvyrivp > 8jks_D interface=35,74,77,78,79,82, gklrqwlidqidsgkypglvweneeksifripwkHagkqdynreedaalfkawalfkgkfregidkpdpptwkRrlRCAlnKsndfeelversqldisdpykvyrivpe
interface signature	RRCK/HRRCAK

Estimated binding specificities ?

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# IC=11.112 IC/col=1.010 n_of_columns=11

specificity:

A |   5   6  80   0  80   0   0   6  80   0  96
C |   5   5   5   0   5  96  96   5   5   0   0
G |   5  80   5  96   5   0   0  80   6  96   0
T |  81   5   6   0   6   0   0   5   5   0   0

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updated Mon Dec 16 05:46:42 2024