8jsi_A : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF A DNA-PROTEIN COMPLEX
experiment	NMR
structural superfamily	Ribonuclease H-like;PAZ domain;
redundant complexes	8wd8_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8jsi_A interface=35,37,280,284,490,493,505,506,509,635,663,709, mlmkvltnmvklnqdiipneiylykifnkpedgmNiYkiayrnhgividpqnriiatpseleysgkfaiedeisfnelpenyqnrlvlrilrdngisdhalsrtlqkyrkpkpfgdfevipeirssvikhggdfylvlhlshqirskktlwelvgrnkdalrdflkehrgtillrdiasehkvvykpifkryngdpdliednsndvehwydyhlerywntpelkkefykkfgpvdlnqpiilakplrqhnrgdlvhllpqfvvpvynaeqlndilaseiLeylKltsnqrisllsrlindiktntniivsslteleantfdvdlndmlqvrnadnvkvtlseleisktrlftwmksrkypvilpydipqklkkiekipvfiivdsalsrdiqtfakdefrylisslqkslsnwvdfpildirdkyiftidltsdkdivnlsiklvnlmknaelglaliatrtklpnetfdevkkrlfsvniisqvvneaTlyKrdkynesrlnlYVqhNllfqilsklgikyyvlrhkfsydyivgidvtpmklshgyiggsavmfdsirkiipveigeqmgesidmkeffkdmvvqfgkfgidlegksililrdgkitkdeeeglayiskvfgikittfnivkRhllrifanrklylrlansvyllphrikQsvgtpvplklsekrlildgtitsqeityndifeilllselnygsiSadmklpapvhyahkfvralrkgwr
interface signature	NYLKTKYVNRQS

Estimated binding specificities ?

readout + contact

# IC=3.795 IC/col=0.271 n_of_columns=14

specificity:

A |   0  24  24  24  21  21  24  24  22  49   7  10  24   0
C |  96  24  24  24  31  21  24  24  22  15  74  63  24  96
G |   0  24  24  24  23  23  24  24  25  15   7  10  24   0
T |   0  24  24  24  21  31  24  24  27  17   8  13  24   0

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updated Wed Dec 18 18:46:56 2024