8jsi_A : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF A DNA-PROTEIN COMPLEX
experiment	NMR
structural superfamily	Ribonuclease H-like;PAZ domain;
redundant complexes	8wd8_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8jsi_A interface=35,37,280,284,490,493,505,506,509,635,663,709, mlmkvltnmvklnqdiipneiylykifnkpedgmNiYkiayrnhgividpqnriiatpseleysgkfaiedeisfnelpenyqnrlvlrilrdngisdhalsrtlqkyrkpkpfgdfevipeirssvikhggdfylvlhlshqirskktlwelvgrnkdalrdflkehrgtillrdiasehkvvykpifkryngdpdliednsndvehwydyhlerywntpelkkefykkfgpvdlnqpiilakplrqhnrgdlvhllpqfvvpvynaeqlndilaseiLeylKltsnqrisllsrlindiktntniivsslteleantfdvdlndmlqvrnadnvkvtlseleisktrlftwmksrkypvilpydipqklkkiekipvfiivdsalsrdiqtfakdefrylisslqkslsnwvdfpildirdkyiftidltsdkdivnlsiklvnlmknaelglaliatrtklpnetfdevkkrlfsvniisqvvneaTlyKrdkynesrlnlYVqhNllfqilsklgikyyvlrhkfsydyivgidvtpmklshgyiggsavmfdsirkiipveigeqmgesidmkeffkdmvvqfgkfgidlegksililrdgkitkdeeeglayiskvfgikittfnivkRhllrifanrklylrlansvyllphrikQsvgtpvplklsekrlildgtitsqeityndifeilllselnygsiSadmklpapvhyahkfvralrkgwr
interface signature	NYLKTKYVNRQS

Estimated binding specificities ?

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# IC=3.818 IC/col=0.273 n_of_columns=14

specificity:

A |   0  24  10   7  15  27  24  24  31  21  24  24  24   0
C |   0  24  13   7  15  22  24  24  21  21  24  24  24   0
G |  96  24  63  75  17  25  24  24  21  31  24  24  24  96
T |   0  24  10   7  49  22  24  24  23  23  24  24  24   0

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updated Mon Aug 4 01:32:46 2025