8wd8_B : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF TTDAGO-GUIDE DNA-TARGET DNA COMPLEX
experiment	NMR
structural superfamily	Ribonuclease H-like;PAZ domain;
sequence family	Piwi domain;
reference complex	8jsi_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8wd8_B interface=35,37,85,267,268,280,284,490,493,505,506,509,638,666,712,713, mlmkvltnmvklnqdiipneiylykifnkpedgmNiYkiayrnhgividpqnriiatpseleysgkfaiedeisfnelpenyqnRlvlrilrdngisdhalsrtlqkyrkpkpfgdfevipeirssvikhggdfylvlhlshqirskktlwelvgrnkdalrdflkehrgtillrdiasehkvvykpifkryngdpdliednsndvehwydyhlerywntpelkkefykkfgpvdlnqpiilakplrqhnrgdlvhllpqfvvpvyNAeqlndilaseiLeylKltsnqrisllsrlindiktntniivsslteleantfdvdlndmlqvrnadnvkvtlseleisktrlftwmksrkypvilpydipqklkkiekipvfiivdsalsrdiqtfakdefrylisslqkslsnwvdfpildirdkyiftidltsdkdivnlsiklvnlmknaelglaliatrtklpnetfdevkkrlfsvniisqvvneaTlyKrdkynesrlnlYVqhNllfqilsklgikyyvlrhkfsydyivgidvtpmklshgyiggsavmfdsqgyirkiipveigeqmgesidmkeffkdmvvqfgkfgidlegksililrdgkitkdeeeglayiskvfgikittfnivkRhllrifanrklylrlansvyllphrikQsvgtpvplklsekrlildgtitsqeityndifeilllselnygsiSAdmklpapvhyahkfvralrkgwrireellaegflyfv
interface signature	NYRNALKTKYVNRQSA

Estimated binding specificities ?

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# IC=6.292 IC/col=0.449 n_of_columns=14

specificity:

A |   0  24   0   9   7  24  24  24  73  24  24  24   7   0
C |   0  24   0   7   7  24  24  24   7  24  24  24   7   0
G |  96  24  96  73   9  24  24  24   7  24  24  24   7  96
T |   0  24   0   7  73  24  24  24   9  24  24  24  75   0

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updated Sun Aug 3 04:39:06 2025