8wd8_B : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF TTDAGO-GUIDE DNA-TARGET DNA COMPLEX
experiment	NMR
structural superfamily	Ribonuclease H-like;PAZ domain;
sequence family	Piwi domain;
reference complex	8jsi_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8wd8_B interface=35,37,85,267,268,280,284,490,493,505,506,509,638,666,712,713, mlmkvltnmvklnqdiipneiylykifnkpedgmNiYkiayrnhgividpqnriiatpseleysgkfaiedeisfnelpenyqnRlvlrilrdngisdhalsrtlqkyrkpkpfgdfevipeirssvikhggdfylvlhlshqirskktlwelvgrnkdalrdflkehrgtillrdiasehkvvykpifkryngdpdliednsndvehwydyhlerywntpelkkefykkfgpvdlnqpiilakplrqhnrgdlvhllpqfvvpvyNAeqlndilaseiLeylKltsnqrisllsrlindiktntniivsslteleantfdvdlndmlqvrnadnvkvtlseleisktrlftwmksrkypvilpydipqklkkiekipvfiivdsalsrdiqtfakdefrylisslqkslsnwvdfpildirdkyiftidltsdkdivnlsiklvnlmknaelglaliatrtklpnetfdevkkrlfsvniisqvvneaTlyKrdkynesrlnlYVqhNllfqilsklgikyyvlrhkfsydyivgidvtpmklshgyiggsavmfdsqgyirkiipveigeqmgesidmkeffkdmvvqfgkfgidlegksililrdgkitkdeeeglayiskvfgikittfnivkRhllrifanrklylrlansvyllphrikQsvgtpvplklsekrlildgtitsqeityndifeilllselnygsiSAdmklpapvhyahkfvralrkgwrireellaegflyfv
interface signature	NYRNALKTKYVNRQSA

Estimated binding specificities ?

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# IC=7.218 IC/col=0.516 n_of_columns=14

specificity:

A |   0  57  24  24  24   6  24  24  24  89   6   0   6   0
C |  96  12  24  24  24   6  24  24  24   1  83  96  12  96
G |   0  12  24  24  24   8  24  24  24   6   0   0  14   0
T |   0  15  24  24  24  76  24  24  24   0   7   0  64   0

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updated Sat Jan 10 03:37:59 2026