8k8c_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF C/EBPALPHA BZIP DOMAIN BOUND TO A HIGH AFFINITY DNA
reference	Chen et al. J.Biol.Chem. 300 105776 2024
source	Homo sapiens
experiment	X-ray (resolution=2.06, R-factor=?)
structural superfamily	Leucine zipper domain;
reference complex	8k8c_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8k8c_A interface=9,12,13,15,16,19,20, nsneyrvrRerNNiAVrkSRdkakqrnvetqqkvleltsdndrlrkrveqlsreldtlrg > 8k8c_B interface=7,9,10,11,13,14,17,18, neyrvrReRNNiAVrkSRdkakqrnvetqqkvleltsdndrlrkrveqlsreldtlrg
interface signature	RNNAVSR/RRNNAVSR

Estimated binding specificities ?

readout + contact

# IC=10.666 IC/col=1.067 n_of_columns=10

specificity:

A |  43   0   0  96   0   0   9  96  96  17
C |   8   0   0   0  96   0   0   0   0  26
G |  19   0   0   0   0  96   0   0   0   8
T |  26  96  96   0   0   0  87   0   0  45

scan!

home
updated Thu Jan 8 05:05:17 2026