8k8d_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF C/EBPBETA BZIP DOMAIN BOUND TO A HIGH AFFINITY DNA
reference	Chen et al. J.Biol.Chem. 300 105776 2024
source	Homo sapiens
experiment	X-ray (resolution=2.20, R-factor=?)
structural superfamily	Leucine zipper domain;
reference complex	6mg1_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8k8d_A interface=11,14,15,17,18,21,22, dkhsdeykirRerNNiAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfkqlp > 8k8d_B interface=11,14,15,17,18,21,22, dkhsdeykirRerNNiAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfkq
interface signature	RNNAVSR/RNNAVSR

Estimated binding specificities ?

readout + contact

# IC=9.999 IC/col=1.111 n_of_columns=9

specificity:

A |   0   0  83   0   0   0  96  96  29
C |   0   0   0  96   0  14   0   0  13
G |   0   0  13   0  96   0   0   0  13
T |  96  96   0   0   0  82   0   0  41

scan!

home
updated Sat Jun 27 14:38:53 2026