8k9g_EF : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF CRT-SPARTA-GRNA-TDNA DIMER (CONFORMATION-1)
experiment	NMR
structural superfamily	Toll/Interleukin receptor TIR domain;Ribonuclease H-like;
reference complex	8ifk_A 8ifk_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8k9g_E interface=311,340, mkeliyieepsilfahgqkctdprdglalfgplnqiygiksgvvgtqkglqifksyldkiqkpiynhnnitrpmfpgfeavfgckwesqnivfkeitdeeirrylfnasthkrtydlvtlfndkiitankndeervdvwfvivpeeiykycraqfhdqlkarllehtiptqilrestlawrdfkntfgapirdfskieghlawtistaayykaggkpwklgdirpgvcylglvykkieksknpqnaccaaqmfldngdgtvfkgevgpwynpekgeyhlkpkeakalltqalesykeqnksypkevfihaRtrfndeewnafnevtpkntnlvgvtitkSkplklyktegafpimrgnayivdekkaflwtlgfvpklqstlsmevpnpifieinkgeaeiqqvlkdilaltklnynaciyadgepvtlrfankigeiltasteiktpplafkyyi > 8k9g_F interface=263,289,358,431,434,435,438,442, mrnkifishatpedddftrwlslkliglgyevwcdilfldkgvdfwstiekeirentckflivsstagnkregvlkelavatkvkkhlqddmfiiplaidenlsyddinieivrlnaidfkkswakglqdlldafekqnvpkkppdhsksnllyqqiflhdkqaiekeetydsnwfpiisfpnelrfhrydwrlpkqfdvrtlafpairykeylctfaweydfihqlpktetyngqesiristsdilsgrydtdfirnyecqRlivqlinkafelrmkdknvreyqmsKtfaywiekgklekdkfekiklvgkqknkywhfgisaagklypspvlmvsshiiftmdginliksksiqHssrrkqgknwwndkwrekllafirflsddqnaiylnvgseekilisnkplkffgkmsyvtpsevtleeesvlAdiNNfeEdteDldeledie
interface signature	RS/RKHANNED

Estimated binding specificities ?

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# IC=5.436 IC/col=0.604 n_of_columns=9

specificity:

A |   0  17  62  24  24  24   0  96   0
C |  78   8  17  24  24  24  96   0   0
G |   8  19  17  24  24  24   0   0   0
T |  10  52   0  24  24  24   0   0  96

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updated Mon Dec 16 06:36:52 2024