Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CONTAINING H3.8
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes8kb5_ABCDEFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  RA----LT----RC------                                +3kwq_E    
                                       +--------------1 
  RG----------RT------            +---11              +8grq_A    
                                  !    !  
  RT----LA----RG------       +---18    +--------------7unc_a    
                             !    !  
  RG----------RG------       !    +-------------------6iy2_A    
                             !  
  RT--RG--------------       !              +-------------------6pww_K    
                             !              !  
  ------EA------RG----       !              !              +---------7n8n_A    
                             !              !        +-----9 
  ------------RA----RA       !              !        !     +---------6a5l_g    
                             !              !        !  
  ----------------KG--       !              !     +-12             +-7nkx_f    
                             !           +-17     !  !    +--------6 
  ------------RA------       !           !  !     !  !    !        ! +1zla_C    
                             !           !  !     !  !    !        +-5 
  ------------RG------       !           !  !     !  +---10          +8ox0_C    
                             !           !  !  +-15       !  
  ------------RG------       !           !  !  !  !       !          +3w99_F    
                           -24           !  !  !  !       +----------3 
  ------------RG------       !        +-20  !  !  !                  +8jla_C    
                             !        !  !  +-16  !  
  ------LT------------       !        !  !     !  +-----------------7ywx_E    
                             !        !  !     !  
  ----------IT--------       !        !  !     !                  +3wkj_D    
                             !        !  !     +------------------2 
  --------------RA----       !     +-21  !                        +6g0l_D    
                             !     !  !  !  
  RG------------------       !     !  !  +--------------------5z3u_A    
                             !     !  !  
  ------------RC------       !     !  !                 +---7xyf_B    
                             !     !  !    +------------8 
  ------------RT------       !  +-22  !    !            +---7kbd_C    
                             !  !  !  +---14  
  --------KT----------   L   !  !  !       !              +-7cvo_A    
                             !  !  !       +--------------7 
  ------------RG------       !  !  !                      +-5x0y_G    
                             +-23  !  
  RGYG--QC----RG------          !  +----------------------7y7i_E    
                                !  
  RG----------RT------          !  +--------------------7zs9_e    
                                +-19  
  RAYT--LT----RC------             !    +---------------4xzq_E    
                                   +---13  
  RCYA--------RG------                  !              +7ccr_A    
                                        +--------------4 
  RG----LC----RT------                                 +8hr1_E    
                           

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updated Mon Aug 4 01:35:01 2025