8kb5_A : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	CRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CONTAINING H3.8
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	8kb5_ABCDEFGH
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8kb5_A interface=1,2,45, HRyrpgtvalreirhyqkstellirklpfqrlvreiaqdfktdlRfqraaigtlqeaseaylvglfedtnlcaihatrvtimpkdiqlarhirgerv

  
  RT----LA------RG----                                    +7unc_a    
                                           +--------------1 
  RG------------RT----                   +-8              +6px1_A    
                                         ! ! 
  RT--RG--------------          +--------9 +--------------6pww_K    
                                !        ! 
  RG------------RT----          !        !             +7zs9_e    
                                !        +-------------4 
  --------------RC----          !                      +7ux9_E    
                                !  
  RG------------------          !     +-------------------5z3u_A    
                             +-16     !  
  RCYA----------RG----       !  !  +-14  +-----------------7ccr_A    
                             !  !  !  !  !  
  ----------------KG--       !  !  !  +-11                 +7nkx_f    
                             !  !  !     !  +--------------5 
  --------------RG----       !  !  !     !  !              +8upf_G    
                             !  !  !     +-10  
  ----------IT--------       !  +-15        !        +------3wkj_D    
                             !     !        +--------7 
  --------------RA--RA       !     !                 !      +6a5l_g    
                           -17     !                 +------2 
  --------------RC----       !     !                        +7yqk_C    
                             !     !  
  RGYG--QC------RG----       !     !  +------------------7y7i_E    
                             !     +-13  
  ------LT------------       !        !            +-----7ywx_E    
                             !        +------------6 
  --------------RA----       !                     +-----7e9c_F    
                             !  
  --------KT----------   L   !      +-----------------7cvo_A    
                             +-----12  
  --------------RT----              !                 +7kbd_C    
                                    +-----------------3 
  --------HG--RTRG----                                +8rbx_V

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updated Sun Jan 11 00:38:27 2026