Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CONTAINING H3.8
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes8kb5_ABCDEFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  RG----------RG------                      +-----------------------------6iy2_A    
                                         +-19  
  RA----LT----RC------                +-20  +-----------------------------3kwq_E    
                                      !  !  
  RG----------RT------                !  +-----------------------------8grq_A    
                                      !  
  RG----------RT------                !              +--------------7zs9_e    
                                      !       +-----10  
  RCYA--------RG------                !       !      !              +7ccr_A    
                                      !       !      +--------------1 
  RG----LC----RT------                !       !                     +8hr1_E    
                                      !       !  
  RT----LA----RG------                !       !             +--------------7unc_a    
                                      !       !             ! 
  ----------------KG--                !       !           +-9             +7nkx_f    
                                      !       !           ! !      +------3 
  ------------RG------             +-21       !           ! !      !      +8jla_C    
                                   !  !       !           ! +------7 
  ------------RA------             !  !   +--17        +-11        !       +1zla_C    
                                   !  !   !   !        !  !        +-------2 
  ------------RG------             !  !   !   !        !  !                +8ox0_C    
                                   !  !   !   !        !  !  
  ------EA------RG----             !  !   !   !     +-13  !      +--------7n8n_A    
                                   !  !   !   !     !  !  +------8 
  ------------RA----RA             !  !   !   !     !  !         +--------6a5l_g    
                                   !  !   !   !  +-14  !  
  RT--RG--------------             !  !   !   !  !  !  +------------------6pww_K    
                                   !  !   !   !  !  !  
  --------KT----------   L         !  !   !   !  !  !                +-7cvo_A    
                                   !  +--18   +-16  +----------------4 
  ------------RG------          +-22      !      !                   +-5x0y_G    
                                !  !      !      !  
  RGYG--QC----RG------          !  !      !      !  +-------------------7y7i_E    
                                !  !      !      +-15  
  ------LT------------          !  !      !         !             +-----7ywx_E    
                                !  !      !         +-------------6 
  --------------RA----          !  !      !                       +-----6g0l_D    
                                !  !      !  
  ------------RC------       +-23  !      !                      +--7xyf_B    
                             !  !  !      !        +-------------5 
  ------------RT------       !  !  !      +-------12             +--7kbd_C    
                             !  !  !               !  
  ----------IT--------       !  !  !               +----------------3wkj_D    
                           -24  !  !  
  RAYT--LT----RC------       !  !  +-----------------------------4xzq_E    
                             !  !  
  RG------------------       !  +-----------------------------5z3u_A    
                             !  
  ------------RG------       +-----------------------------3w99_F    
                           

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updated Wed Dec 18 18:49:39 2024