8kb5_A : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	CRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CONTAINING H3.8
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	8kb5_ABCDEFGH
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8kb5_A interface=1,2,45, HRyrpgtvalreirhyqkstellirklpfqrlvreiaqdfktdlRfqraaigtlqeaseaylvglfedtnlcaihatrvtimpkdiqlarhirgerv

  
  RG----------RG----                                 +-----------------------------6iy2_A    
                                                   +-6 
  RA----LT----RC----                             +-7 +-----------------------------3kwq_E    
                                                 ! ! 
  RT--RG------------                           +-8 +-----------------------------6pww_K    
                                               ! ! 
  RAYT--LT----RC----                         +-9 +-----------------------------4xzq_E    
                                             ! ! 
  RG----------RT----                      +-10 +-----------------------------7zs9_e    
                                          !  !  
  RCYA--------RG----                   +-11  +-----------------------------7ccr_A    
                                       !  !  
  RGYG--QC----RG----                   !  +-----------------------------7y7i_E    
                                       !  
  ----------------KG                +-12                         +---7nkx_f    
                                    !  !  +----------------------2 
  RT----LA----RG----                !  !  !                      +---7unc_a    
                                    !  !  ! 
  ------------RC----                !  +--5                       +--7xyf_B    
                                    !     !         +-------------1 
  ------------RT----             +-13     !     +---3             +--7kbd_C    
                                 !  !     !     !   ! 
  ----------IT------             !  !     +-----4   +----------------3wkj_D    
                                 !  !           ! 
  --------KT--------   L      +-14  !           +--------------------7cvo_A    
                              !  !  !  
  RG----------------          !  !  +-----------------------------5z3u_A    
                           +-15  !  
  ------LT----------       !  !  +-----------------------------7ywx_E    
                         -16  !  
  ------EA------RG--       !  +-----------------------------7n8n_A    
                           !  
  ------------RG----       +-----------------------------3w99_F

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updated Sat Sep 14 11:21:10 2024