Interface of input file ?

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3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.

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updated Thu Sep 12 04:35:07 2024

structure name	CRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CONTAINING H3.8
experiment	NMR
structural superfamily	Histone-fold;P-loop containing nucleoside triphosphate hydrolases;Chromo domain-like;Homeodomain-like;PH domain-like;lambda repressor-like DNA-binding domains;p53-like transcription factors;Nucleic acid-binding proteins;
reference complex	5gtc_H 5o9g_F 5o9g_G 6a5l_d 6buz_H 6c0w_H 6ftx_B 6g0l_M 6r8y_H 6see_H 6t7a_H 6upk_H 6x0n_f 6x59_H 6y5d_H 7d1z_H 7e8d_H 7jzv_N 7k5x_H 7k60_H 7k63_H 7nkx_f 7pet_H 7scy_H 7u0g_M 7vdt_B 7xcr_F 7xzx_N 7xzz_N 8h0v_h 8kb5_A 8xgc_4
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8kb5_A interface=1,2,45, HRyrpgtvalreirhyqkstellirklpfqrlvreiaqdfktdlRfqraaigtlqeaseaylvglfedtnlcaihatrvtimpkdiqlarhirgerv > 8kb5_B interface= VLrdniqgitkpairrlarrggvkrisgliyeetrgvlkvflenVirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 8kb5_C interface=1,32, RakaktrssraglqfpvgrvhrllrkgnyseRvgagapvylaavleyltaeilelagnaardnkktriiprhlqlairndeelnkllgrvtiaqggvlpniqavllpk > 8kb5_D interface= RkesysiyvykvlkqvhpdtgisskamgimnSfvndiferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsa > 8kb5_E interface=2,45, hRyrpgtvalreirhyqkstellirklpfqrlvreiaqdfktdlRfqraaigtlqeaseaylvglfedtnlcaihatrvtimpkdiqlarhirgerv > 8kb5_F interface= vLrdniqgitkpairrlarrggvkrisgliyeetrgvlkvflenVirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 8kb5_G interface=1,32, RakaktrssraglqfpvgrvhrllrkgnyseRvgagapvylaavleyltaeilelagnaardnkktriiprhlqlairndeelnkllgrvtiaqggvlpniqavllpk > 8kb5_H interface= RkesysiyvykvlkqvhpdtgisskamgimnSfvndiferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsa