8kcm_B : 3D-footprint complex

structure name	MMCPDII-DNA COMPLEX CONTAINING LOW-DOSAGE, LIGHT INDUCED REPAIRED DNA. (Deoxyribodipyrimidine photo-lyase)
reference	Ngura Putu et al. Science 382 eadd7795 2023
source	Methanosarcina mazei
experiment	X-ray (resolution=2.50, R-factor=0.220)
structural superfamily	Cryptochrome/photolyase FAD-binding domain;Cryptochrome/photolyase, N-terminal domain;
sequence family	FAD binding domain of DNA photolyase;
reference complex	7yc7_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8kcm_B interface=157,160,222,223,267,271,345,387,395,397,407,416, hmnpkriralksgkqgdgpvvywmsrdqraednwallfsraiakeanvpvvvvfcltdefleagirqyefmlkglqelevslsrkkipsfflrgdpgekisrfvkdynagtlvtdfsplriknqwiekvisgisipffevdahnvvpcweasqkheYaaHtfrpklyallpefleefpelepnsvtpdplfepwhfepgekaakkvmesfiadrldsygalRNdptknmlsnlspylhfgqissqrvvlevekaesnpgskkafldEiliWkeisdnfcyynpgydgfesfpswakeslnahrndvrshiytleefeagkthdplwnasqmellstgkmhgytrMywakkilewsespekaleiaiclndryeldgrdpngyagiaWsiggvhdRaWgerevtgkiRymsyegckRkfdvklyiekys
interface signature	YHRNEWMWRWRR

Estimated binding specificities ?

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# IC=6.303 IC/col=0.630 n_of_columns=10

specificity:

A |  12  13  10  24   0  96  96   0  22  19
C |  12  56  13  24   0   0   0   0  27  39
G |  60  14  63  24  96   0   0  96  22  19
T |  12  13  10  24   0   0   0   0  25  19

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updated Sat Jan 10 00:15:36 2026