8kgq_AB : 3D-footprint complex

structure name	STRUCTURE OF AFRICAN SWINE FEVER VIRUS TOPOISOMERASE II IN COMPLEX WITH DSDNA
experiment	NMR
structural superfamily	Type II DNA topoisomerase;
reference complex	8j9v_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8kgq_A interface=471,545,704,754,797,849,850,855, afeisdfkehakkksmwagalnkvtisglmgvftededlmalpihrdhcpallkifdeiivnatdherachnktkkvtyikisfdkgvfscendgpgipiakheqasliakrdvyvpevaschflagtninkakdcikggtngvglklamvhsqwailttadgaqkyvqhinqrldiiepptitpsremftrielmpvyqelgyaeplseteqadlsawiylracqcaayvgkgttiyyndkpcrtgsvmalakmytllsapnstihtatikadakpyslhplqvaavvspkfkkfehvsvingvncvkgehvtflkktinemvvkkfqqtikdknrkttlrdscsnifivivgsipgiewtgqrkdelsiaenvfkthysipssfltsmtksivdillqsiskkdnhkqvdvdkytrarnaggkraqdcmllaaegdsalsllrtgltlgksnpsgpsfdfcgmislggVimnackkvtnittdsgetimvrneqltnnkvlqgivqvlgldfnchyktqeeraklrygcivacvdqdldgcgKilglllayfhlfwpqliihgfvkrlltplirvyekgktmpvefyyeqefdawakkqtslanhtvkyykglaahdthevksmfkhfdnmvytftlddsakelfhiyfggeselrkrelctgvvpltetqtqsihsvrripcslhlqvdtkaykldaierQipnfldgmtrarrkilaggvkcfasnnrerkvfqfggyvadhmfyhhgdMslntsiikaaqyypgsshlypvfigigsfgsrhlggkdagspRyisvqlasefiktmfpaedswllpyvfedgqraepeyyvpvlplaimeygaNPsegwKyttwarqledilalvrayvdkdnpkhellhyaikhkitilplrpsnynfkghlkrfgqyyysygtyviseqrniititelplrvptvayiesikkssnrmtfieeiidysssetieilvklkpnslnriveefketeeqdsienflrlrnclhshlnfvkpkggiiefntyyeilyawlpyrrelyqkrlmrehavlklriimetaivryinesaelnlshyedekeasrilsehgfpplnhtliispefasieelnqkalqgcytyilslqarelliaaktrrvekikkmqarldkveqllqespfpgasvwleeidavekaiikgrntqwkfh > 8kgq_B interface=471,545,704,754,797,848,849,850,855, afeisdfkehakkksmwagalnkvtisglmgvftededlmalpihrdhcpallkifdeiivnatdherachnktkkvtyikisfdkgvfscendgpgipiakheqasliakrdvyvpevaschflagtninkakdcikggtngvglklamvhsqwailttadgaqkyvqhinqrldiiepptitpsremftrielmpvyqelgyaeplseteqadlsawiylracqcaayvgkgttiyyndkpcrtgsvmalakmytllsapnstihtatikadakpyslhplqvaavvspkfkkfehvsvingvncvkgehvtflkktinemvvkkfqqtikdknrkttlrdscsnifivivgsipgiewtgqrkdelsiaenvfkthysipssfltsmtksivdillqsiskkdnhkqvdvdkytrarnaggkraqdcmllaaegdsalsllrtgltlgksnpsgpsfdfcgmislggVimnackkvtnittdsgetimvrneqltnnkvlqgivqvlgldfnchyktqeeraklrygcivacvdqdldgcgKilglllayfhlfwpqliihgfvkrlltplirvyekgktmpvefyyeqefdawakkqtslanhtvkyykglaahdthevksmfkhfdnmvytftlddsakelfhiyfggeselrkrelctgvvpltetqtqsihsvrripcslhlqvdtkaykldaierQipnfldgmtrarrkilaggvkcfasnnrerkvfqfggyvadhmfyhhgdMslntsiikaaqyypgsshlypvfigigsfgsrhlggkdagspRyisvqlasefiktmfpaedswllpyvfedgqraepeyyvpvlplaimeygANPsegwKyttwarqledilalvrayvdkdnpkhellhyaikhkitilplrpsnynfkghlkrfgqyyysygtyviseqrniititelplrvptvayiesikkssnrmtfieeiidysssetieilvklkpnslnriveefketeeqdsienflrlrnclhshlnfvkpkggiiefntyyeilyawlpyrrelyqkrlmrehavlklriimetaivryinesaelnlshyedekeasrilsehgfpplnhtliispefasieelnqkalqgcytyilslqarelliaaktrrvekikkmqarldkveqllqespfpgasvwleeidavekaiikgrntqwkfh
interface signature	VKQMRNPK/VKQMRANPK

Estimated binding specificities ?

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# IC=16.208 IC/col=1.013 n_of_columns=16

specificity:

A |  87   0   0   0  10  13  90   5  90   2  87  24  96   0  96   2
C |   5   0   0   0   5   5   2   2   2   2   2  24   0  96   0  87
G |   2   0  96   0  71   2   2   2   2   2   5  24   0   0   0   5
T |   2  96   0  96  10  76   2  87   2  90   2  24   0   0   0   2

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updated Mon Dec 16 06:50:29 2024