8oj6_A : 3D-footprint complex

structure name	HSV-1 DNA POLYMERASE-PROCESSIVITY FACTOR COMPLEX IN PRE-TRANSLOCATION STATE
reference	Gustavsson et al. 'Nucleic 52 7292 2024
experiment	X-ray (resolution=2.41, R-factor=?)
structural superfamily	DNA/RNA polymerases;Ribonuclease H-like;
sequence family	DNA polymerase family B; DNA polymerase family B, exonuclease do;
reference complex	8oja_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8oj6_A interface=559,711,832,833,852,939, tgptqrhtyysecdefrfiaprvldedappekragvhdghlkrapkvycggderdvlrvgsggfwprrsrlwggvdhapagfnptvtvfhvydilenvehaygmraaqfharfmdaitptgtvitllgltpeghrvavhvygtrqyfymnkeevdrhlqcraprdlcermaaalrespgasfrgisadhfeaevvertdvyyyetrpalfyrvyvrsgrvlsylcdnfcpaikkyeggvdattrfildnpgfvtfgwyrlkpgrnntlaqprapmafgtssdvefnctadnlaieggmsdlpayklmcfdieckaggedelafpvaghpedlviqiscllydlsttalehvllfslgscdlpeshlnelaarglptpvvlefdsefemllafmtlvkqygpefvtgyniinfdwpfllakltdiykvpldgygrmngrgvfrvwdigqshfqkrskikvngmvnidmygiitdkiklssyklnavaeavlkdkkkdlsyrdipayyaagpaqrgvigeyciqdsllvgqlffkflphlelsavarlaginitrtiydgQqirvftcllrladqkgfilpdtqgrrhvgyqgarvldptsgfhvnpvvvfdfaslypsiiqahnlcfstlslradavahleagkdyleievggrrlffvkahvresllsillrdwlamrkqirsripqsspeeavlldkqqaaikvvcnsvYgftgvqhgllpclhvaatvttigremllatreyvharwaafeqlladfpeaadmrapgpysmriiygdtdsifvlcrgltaagltavgdkmashisralflppiklecektftkllliakKKyigviyggkmlikgvdlvRknncafinrtsralvdllfyddtvsgaaaalaerpaeewlarplpeglqafgavlvdahrritdperdiqdfvltaelsrhpraytNkrlahltvyyklmarraqvpsikdripyvivaqtreveetvarlarkllvselaedpayaiahgvalntdyyfshllgaacvtfkalfgnnakitesllkrfipevwhppddvaarlrtagfgavgagataeetrrmlhrafdtla
interface signature	QYKKRN

Estimated binding specificities ?

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# IC=3.415 IC/col=0.569 n_of_columns=6

specificity:

A |   6  24   6   6   6   6
C |   6  24   6  78   6  78
G |   6  24  78   6   6   6
T |  78  24   6   6  78   6

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updated Fri Sep 13 12:31:31 2024