interface graph thumbnail
legend  pdf

structure nameTIME-RESOLVED SFX STRUCTURE OF THE CLASS II PHOTOLYASE COMPLEXED WITH A THYMINE DIMER (30 NANOSECOND TIMEPOINT)
(Deoxyribodipyrimidine photo-lyase)
referenceApostolopoulou et al. Science 382 1015 2023
sourceMethanosarcina mazei Go1
experimentX-ray (resolution=2.39, R-factor=0.313)
structural superfamilyCryptochrome/photolyase FAD-binding domain;Cryptochrome/photolyase, N-terminal domain;
sequence familyFAD binding domain of DNA photolyase;
reference complex7yc7_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureHRNDEWMWRWRR

Estimated binding specificities ?

contactlogo
# IC=6.012 IC/col=0.751 n_of_columns=8 specificity:   
A |   0   0   0   4  24   7   8  18
C |  96   0   0  84  24  74  10  42
G |   0   0   0   4  24   7  70  18
T |   0  96  96   4  24   8   8  18
scan!

home
updated Sun Aug 3 02:14:26 2025