8oyc_B : 3D-footprint complex

structure name	TIME-RESOLVED SFX STRUCTURE OF THE CLASS II PHOTOLYASE COMPLEXED WITH A THYMINE DIMER (100 MICROSECOND TIMPEOINT) (Deoxyribodipyrimidine photo-lyase)
reference	Apostolopoulou et al. Science 382 1015 2023
source	Methanosarcina mazei Go1
experiment	X-ray (resolution=2.50, R-factor=0.307)
structural superfamily	Cryptochrome/photolyase FAD-binding domain;Cryptochrome/photolyase, N-terminal domain;
sequence family	FAD binding domain of DNA photolyase;
reference complex	7yc7_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8oyc_B interface=152,217,218,262,266,340,382,390,392,402,411, mnpkriralkspvvywmsrdqraednwallfsraiakeanvpvvvvfcltdefleagirqyefmlkglqelevslsrkkipsfflrgdpgekisrfvkdynagtlvtdfsplriknqwiekvisisipffevdahnvvpcweasqkheyaaHtfrpklyallpefleefpelepnsvtpenkdplfepwhfepgekaakkvmesfiadrldsygalRNdptknmlsnlspylhfgqissqrvvlevekaesnpgskkafldEiliWkeisdnfcyynpgydgfesfpswakeslnahrndvrshiytleefeagkthdplwnasqmellstgkmhgymrMywakkilewsespekaleiaiclndryeldgrdpngyagiaWsiggvhdRaWgerevtgkiRymsyegckRkfdvklyiekysal
interface signature	HRNEWMWRWRR

Estimated binding specificities ?

contact

# IC=7.580 IC/col=0.842 n_of_columns=9

specificity:

A |   0   0   0   0  24   7   7   9  73
C |  96   0   0  96  24  73   7  73   7
G |   0   0   0   0  24   7  73   7   7
T |   0  96  96   0  24   9   9   7   9

scan!

home
updated Sat Jan 10 00:47:45 2026