8pi7_AB : 3D-footprint complex

structure name	DNA BINDING DOMAIN OF HNF-1A BOUND TO P2-HNF4A PROMOTER DNA VARIANT (P2 -169C>T)
reference	Myllykoski et al. 'JCI 9 ? 2024
source	Homo sapiens
experiment	X-ray (resolution=3.20, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;Homeodomain-like;
reference complex	8pi8_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8pi7_A interface=51,52,53,54,56,57,63,94,156,161,164, enlspeeaahqkavvetllqedpwrvakmvksylqqhnipqrevvdttglNQSHlSQhlnkgTpmktqkraalytwyvrkqrevaqqfthagnRfkwgpasqqilfqayerqknpskeeretlveecnraeciqrgvspsqaqglgsnlvtevrvYnwfaNrrKeeaf > 8pi7_B interface=52,53,54,56,57,63,94,156,157,161,164, enlspeeaahqkavvetllqedpwrvakmvksylqqhnipqrevvdttglnQSHlSQhlnkgTpmktqkraalytwyvrkqrevaqqftharnRfkwgpasqqilfqayerqknpskeeretlveecnraeciqrgvspsqaqglgsnlvtevrvYNwfaNrrKeea
interface signature	NQSHSQTRYNK/QSHSQTRYNNK

Estimated binding specificities ?

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# IC=16.349 IC/col=0.962 n_of_columns=17

specificity:

A |   4  24  24  92   0   0  96  82  74   4  96   0   0  96  96   8   0
C |   4  24  24   0   0   0   0   4   4  10   0   0   0   0   0  19  96
G |   4  24  24   0   0   0   0   6   8  82   0  88   0   0   0   8   0
T |  84  24  24   4  96  96   0   4  10   0   0   8  96   0   0  61   0

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updated Mon Dec 16 08:23:15 2024