8pi8_AB : 3D-footprint complex

structure name	DNA BINDING DOMAIN OF HNF-1A BOUND TO P2-HNF4A PROMOTER DNA
reference	Myllykoski et al. 'JCI 9 ? 2024
source	Homo sapiens
experiment	X-ray (resolution=2.30, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8pi8_A interface=56,57,58,59,61,62,68,69,101,163,164,168,171, ilkelenlspeeaahqkavvetllqedpwrvakmvksylqqhnipqrevvdttglNQSHlSQhlnkgTPmktqkraalytwyvrkqrevaqqfthagrrnRfkwgpasqqilfqayerqknpskeeretlveecnraeciqrgvspsqaqglgsnlvtevrvYNwfaNrrKeea > 8pi8_B interface=49,50,51,52,54,55,61,62,91,153,154,158,161, lspeeaahqkavvetllqedpwrvakmvksylqqhnipqrevvdttglNQSHlSQhlnkgTPmktqkraalytwyvrkqrevaqqfthrnRfkwgpasqqilfqayerqknpskeeretlveecnraeciqrgvspsqaqglgsnlvtevrvYNwfaNrrKeea
interface signature	NQSHSQTPRYNNK/NQSHSQTPRYNNK

Estimated binding specificities ?

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# IC=19.911 IC/col=1.171 n_of_columns=17

specificity:

A |   0   0   0   0  96  96  87   0  96   0   0  96  96   0   8  69   8
C |  96   0   0   0   0   0   9   0   0   0   0   0   0  96  72  11   8
G |   0  96   0   0   0   0   0  96   0  96   0   0   0   0   8   8  72
T |   0   0  96  96   0   0   0   0   0   0  96   0   0   0   8   8   8

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updated Thu Sep 12 06:13:44 2024