8pvv_AC : 3D-footprint complex

structure name	ARCHAEOGLOBUS FULGIDUS AFAGO COMPLEX WITH AFAGO-N PROTEIN (FAFAGO) BOUND WITH 30 NT RNA GUIDE AND 51 NT DNA TARGET
experiment	NMR
structural superfamily	Ribonuclease H-like;Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases;
reference complex	8pvv_A 8pvv_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8pvv_A interface=26,30,147,151,154,155,189,295,382, mmeykivengltyrigngasvpisnTgelIkglrnygpyevpslkynqialihnnqfsslinqlksqisskidevwhihninisefiydsphfdsiksqvdnaidtgvdgimlvlpeyntplyyklksylinsipsqfmrydilsnRnltFyvDNllvqfvsklggkpwilnvdpekgsdiiigtgatRidnvnlfcfamvfkkdgtmlwneispivtsseyltylkstikkvvygfkksnpdwdvekltlhvsgkrpkmkdgetkilketveelkkqemvsrdvkyailhlneThpfwvmgdpnnrfhpyegtkvklsskrylltllqpylkrnglemvtpikplsveivsdnwtseeyyhnvheildeiyylskmnwrgFrsrnlpvtvnypklvagiianvnryggypinpegnrslqtnpwfl > 8pvv_C interface=37,90,146,147,163,179, sgilyiniypivnypetikvsaipyyeeflpgkwkkRigdliylygygienefdeidnsnalfgkifrkylldilseniatpwqlkelgStlrlvkeitenyefsniiklqyeliinvhhwqntnfgiivdlkinildrennqriSYtkikdkygesvkkkiWvsvqafhrhltpegkKyatamrdkfnlltgllkeafgssedektfstpdgeikivfkpleivevsn
interface signature	TIRFDNRTF/RSSYWK

Estimated binding specificities ?

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# IC=12.002 IC/col=0.706 n_of_columns=17

specificity:

A |  96   0  24   9  24  24   0   0  24  24  24   0   9   0   9   0   0
C |   0   0  24   9  24  24   0  96  24  24  24  96  67   0  67  96   0
G |   0   0  24  69  24  24   0   0  24  24  24   0  11   0  11   0   0
T |   0  96  24   9  24  24  96   0  24  24  24   0   9  96   9   0  96

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updated Thu Jan 8 07:37:08 2026