8pvv_A : 3D-footprint complex

structure name	ARCHAEOGLOBUS FULGIDUS AFAGO COMPLEX WITH AFAGO-N PROTEIN (FAFAGO) BOUND WITH 30 NT RNA GUIDE AND 51 NT DNA TARGET
experiment	NMR
structural superfamily	Ribonuclease H-like;
sequence family	Piwi domain;
multimeric complexes	8pvv_AC 8qg0_AB
redundant complexes	2w42_B 8qg0
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8pvv_A interface=26,30,147,151,154,155,189,295,382, mmeykivengltyrigngasvpisnTgelIkglrnygpyevpslkynqialihnnqfsslinqlksqisskidevwhihninisefiydsphfdsiksqvdnaidtgvdgimlvlpeyntplyyklksylinsipsqfmrydilsnRnltFyvDNllvqfvsklggkpwilnvdpekgsdiiigtgatRidnvnlfcfamvfkkdgtmlwneispivtsseyltylkstikkvvygfkksnpdwdvekltlhvsgkrpkmkdgetkilketveelkkqemvsrdvkyailhlneThpfwvmgdpnnrfhpyegtkvklsskrylltllqpylkrnglemvtpikplsveivsdnwtseeyyhnvheildeiyylskmnwrgFrsrnlpvtvnypklvagiianvnryggypinpegnrslqtnpwfl
interface signature	TIRFDNRTF

Estimated binding specificities ?

contact

# IC=3.517 IC/col=0.320 n_of_columns=11

specificity:

A |   0   9  24  24  24  24  24  24  16  12   0
C |   0  67  24  24  24  24  24  24  45  60   0
G |   0   9  24  24  24  24  24  24  19  12   0
T |  96  11  24  24  24  24  24  24  16  12  96

scan!

home
updated Sun Jan 11 01:04:04 2026