8q63_AB : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF IC8', A SECOND STATE OF YEAST MITOCHONDRIAL RNA POLYMERASE TRANSCRIPTION INITIATION COMPLEX WITH 8-MER RNA, PPPGPGPUPAPAPAPUPG
experiment	NMR
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8q63_A interface=135,142,144,145,148,171,217,218,219,221,222,371,375,400,404,595,597,598,599,600,605,702,711,712,713,724,736,810, inffeiynslptleekkafesalnifnqdrqkvlenrateaarerwkhdfeeakargdisieknlnvklwkwynemlplvkeeinhcrsllseklsdkkglnkvdtnrlgygpyltlidpgkmcvitilellklNstgegmRtARavIsvgkaiemefrseqvlkkilwpQsirarigsvlismliqvakvsvqgvdpvtkakvhgeapafahgyqYHNgSKlgvlkihktlirqlngerliasvqpqllpmlvepkpwvnwrsggyhytqstllrtkdspeqvaylkaasdngdidrvydglnvlgrtpwtvnrkvfdvvsqvwnkgegfldipgaqdemvlppapppsilrawklqvktiankfssdrSnrcDtnykleiaraflgeklyfphnldfRgraYplsphfnhlgndmsrgllifwhgkklgpsglkwlkihlsnlfgfdklplkdrvafteshlqdikdsaenpltgdrwwttadkpwqalatcfelnevmkmdnpeefishqpvhqdgtcnglqhyaalggdvegatqvnlvpsdkpqdvyahvarlvqkrleiaaekgdenakilkdkitrkvvkqtvmtnvYgVTYVgatfQiakqlspifddrkesldfskyltkhvfsairelfhsahliqdwlgesakrisksirldvdeksfkngnkpdfmssviwttplglpivqpyreeskkQvetnlqtvFISdpfavnpvnaRrqkaglppnfiHsldashmllsaaecgkqgldfasvhdsywthasdidtmnvvlreqfiklhevdlvlrlkeefdqryknyvkigKlkrstdlaqkiirirkdlsrklgrsttladeiyfekkrqellnspliedrnvgekmvttvslfeditdldalegmsvllplrlpeippkgdfdvtvlrnsqyffs > 8q63_B interface=17,100,102,103,104,143,147,148, svpipgikdisklkffYgfkylwnptvynkifdkldltktykhpeelkvldlypgvgiqsaifynkycprqysllekrsslykflnakfegsplqilkrDpYDWstysnlideerifvpevqssdhindkfltvanvtgegsEgliMQwlscignknwlyrfgkvkmllwmpsttarkllarpgmhsrskcsvvreaftdtkliaisdanelkgfdsqcieewdpilfsaaeiwptkgkpialvemdpidfdfdvdnwdyvtrhlmilkrtplntvmdslghggqqyfnsritdkdllkkcpidltndefiyltklfmewpfkpdilmd
interface signature	NRARIQYHNSKSDRYYVTYVQQFISRHK/YDYDWEMQ

Estimated binding specificities ?

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# IC=11.323 IC/col=0.365 n_of_columns=31

specificity:

A |   9  24  24  24  22  21  16   0   9  34  24  24  22  48  20   0   0  96  10  96  96   0  60  24  24  24  24  24  24  24  24
C |   9  24  24  24  22  23  16   0  69  20  24  24  22  16  36  96   0   0  66   0   0   0  12  24  24  24  24  24  24  24  24
G |  67  24  24  24  25  21  16  96   9  20  24  24  25  16  20   0  96   0  10   0   0   0  12  24  24  24  24  24  24  24  24
T |  11  24  24  24  27  31  48   0   9  22  24  24  27  16  20   0   0   0  10   0   0  96  12  24  24  24  24  24  24  24  24

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updated Mon Dec 18 02:50:11 2023