8qg0_AB : 3D-footprint complex

structure name	ARCHAEOGLOBUS FULGIDUS AFAGO COMPLEX WITH AFAGO-N PROTEIN (FAFAGO) BOUND WITH 17 NT RNA GUIDE AND 17 NT DNA TARGET
experiment	NMR
structural superfamily	Ribonuclease H-like;Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases;
reference complex	8pvv_A 8pvv_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8qg0_A interface=26,30,147,150,151,154,155,189,295,382, mmeykivengltyrigngasvpisnTgelIkglrnygpyevpslkynqialihnnqfsslinqlksqisskidevwhihninisefiydsphfdsiksqvdnaidtgvdgimlvlpeyntplyyklksylinsipsqfmrydilsnRnlTFyvDNllvqfvsklggkpwilnvdpekgsdiiigtgatRidnvnlfcfamvfkkdgtmlwneispivtsseyltylkstikkvvygfkksnpdwdvekltlhvsgkrpkmkdgetkilketveelkkqemvsrdvkyailhlneThpfwvmgdpnnrfhpyegtkvklsskrylltllqpylkrnglemvtpikplsveivsdnwtseeyyhnvheildeiyylskmnwrgFrsrnlpvtvnypklvagiianvnryggypinpegnrslqtnpwfl > 8qg0_B interface=37,90,147,148,163, sgilyiniypivnypetikvsaipyyeeflpgkwkkRigdliylygygienefdeidnsnalfgkifrkylldilseniatpwqlkelgStlrlvkeitenyefsniiklqyeliinvhhwqntnfgiivdlkinildrennqrisYTkikdkygesvkkkiWvsvqafhrhltpegkkyatamrdkfnlltgllkeafgssedektfstpdgeikivfkpleivevsn
interface signature	TIRTFDNRTF/RSYTW

Estimated binding specificities ?

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# IC=8.472 IC/col=0.498 n_of_columns=17

specificity:

A |  96  13  24   0  24  24   0  24  24  24  13   0  24  24  24  96   0
C |   0  16  24  96  24  24  96  24  24  24  13   0  24  24  24   0   0
G |   0  13  24   0  24  24   0  24  24  24  57   0  24  24  24   0   0
T |   0  54  24   0  24  24   0  24  24  24  13  96  24  24  24   0  96

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updated Mon Dec 16 09:04:46 2024