8qlp_AB : 3D-footprint complex

structure name	CRYOEM STRUCTURE OF THE RNA/DNA BOUND SPARTA (BABAGO/TIR-APAZ) TETRAMERIC COMPLEX
experiment	NMR
structural superfamily	Toll/Interleukin receptor TIR domain;Ribonuclease H-like;
reference complex	8qlp_A 8qlp_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8qlp_A interface=257,352,356, arnkifishaapddndftkwlalklialgyevwcdvlffwkvidkeiregaikfllatseiaikrdgvlkeiavaekvkkqlkddnfiipliidenlsyddlppeiirlnavdfkkswavglqdllkalddqkveknspdpdksnalyqqiflhnkgiiereeiydsnwfsilsfpkelrfhdyeklmpkgfdvreltypavryknylctfaweydfmhqlpktetynssqtiripteeilsgkydspfignfecqRlivqllnkafelrmkekgvreypmsnkmgywfekgklekdkfnkvllvgkqkdkhwhfgisaagklypfpvlmisshifftkdgkelieskkiqHaarRrqgknwwnddwrnkllafvkylsddensfylevgseekiyisnepvqfvgkvsynm > 8qlp_B interface=192,273, mkeliyihepnilfangqkcadprdglalfgpftkiygiksgvvgtqyglsifknyinhiqkpiynannitrpmfpgfeavfgckwdadnvvfkevtkeeiekilytesnhkrtydlvslfinkiitanknedekvdvwflvipdeiyqycraqfhdqlkarllehtiptqilrestlawrdfknkfgapkRdfskieghlawtistaafykaggkpwklsdirsgvcylglvykqiepknaccaaqmfldngdgtvfkgevgpwynqekheFhlnpkeakalltqalnsykeqngvfpkeifihaktkfngqewnafqevtpegtnlvgvtitktkplklfksegnypimrgnafivnersaflwtvgyvpktestlsmevpnpifieinkgeadieqvlkdvlaltklnynaciyadgvpvtlrfadkigeiltastelkapplafkyyi
interface signature	RHR/RF

Estimated binding specificities ?

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# IC=6.724 IC/col=0.517 n_of_columns=13

specificity:

A |  96   8  24  24  17  24  24  24   0   0  17  24   0
C |   0   2  24  24  19  24  24  24   0  96  62  24   0
G |   0  78  24  24   8  24  24  24  96   0  17  24   0
T |   0   8  24  24  52  24  24  24   0   0   0  24  96

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updated Sat Jun 27 17:31:18 2026