8qlp_EF : 3D-footprint complex

structure name	CRYOEM STRUCTURE OF THE RNA/DNA BOUND SPARTA (BABAGO/TIR-APAZ) TETRAMERIC COMPLEX
experiment	NMR
structural superfamily	Toll/Interleukin receptor TIR domain;Ribonuclease H-like;
reference complex	8qlp_A 8qlp_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8qlp_E interface=263,358,362, arnkifishaapddndftkwlalklialgyevwcdvlfldkgadfwkvidkeiregaikfllatseiaikrdgvlkeiavaekvkkqlkddnfiipliidenlsyddlppeiirlnavdfkkswavglqdllkalddqkveknspdpdksnalyqqiflhnkgiiereeiydsnwfsilsfpkelrfhdyeklmpkgfdvreltypavryknylctfaweydfmhqlpktetynssqtiripteeilsgkydspfignfecqRlivqllnkafelrmkekgvreypmsnkmgywfekgklekdkfnkvllvgkqkdkhwhfgisaagklypfpvlmisshifftkdgkelieskkiqHaarRrqgknwwnddwrnkllafvkylsddensfylevgseekiyisnepvqfvgkvsynmp > 8qlp_F interface=192,273, mkeliyihepnilfangqkcadprdglalfgpftkiygiksgvvgtqyglsifknyinhiqkpiynannitrpmfpgfeavfgckwdadnvvfkevtkeeiekilytesnhkrtydlvslfinkiitanknedekvdvwflvipdeiyqycraqfhdqlkarllehtiptqilrestlawrdfknkfgapkRdfskieghlawtistaafykaggkpwklsdirsgvcylglvykqiepknaccaaqmfldngdgtvfkgevgpwynqekheFhlnpkeakalltqalnsykeqngvfpkeifihaktkfngqewnafqevtpegtnlvgvtitktkplklfksegnypimrgnafivnersaflwtvgyvpktestlsmevpnpifieinkgeadieqvlkdvlaltklnynaciyadgvpvtlrfadkigeiltastelkapplafkyyi
interface signature	RHR/RF

Estimated binding specificities ?

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# IC=3.315 IC/col=0.255 n_of_columns=13

specificity:

A |  74  24  24  24  21  24  24  24   7   7  14  24   0
C |   7  24  24  24  21  24  24  24   8  74  54  24   0
G |   7  24  24  24  23  24  24  24  74   7  14  24   0
T |   8  24  24  24  31  24  24  24   7   8  14  24  96

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updated Thu Jan 8 07:57:16 2026