8qlp_IJ : 3D-footprint complex

structure name	CRYOEM STRUCTURE OF THE RNA/DNA BOUND SPARTA (BABAGO/TIR-APAZ) TETRAMERIC COMPLEX
experiment	NMR
structural superfamily	Toll/Interleukin receptor TIR domain;Ribonuclease H-like;
reference complex	8qlp_A 8qlp_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8qlp_I interface=260,355,359, arnkifishaapddndftkwlalklialgyevwcdvlflddfwkvidkeiregaikfllatseiaikrdgvlkeiavaekvkkqlkddnfiipliidenlsyddlppeiirlnavdfkkswavglqdllkalddqkveknspdpdksnalyqqiflhnkgiiereeiydsnwfsilsfpkelrfhdyeklmpkgfdvreltypavryknylctfaweydfmhqlpktetynssqtiripteeilsgkydspfignfecqRlivqllnkafelrmkekgvreypmsnkmgywfekgklekdkfnkvllvgkqkdkhwhfgisaagklypfpvlmisshifftkdgkelieskkiqHaarRrqgknwwnddwrnkllafvkylsddensfylevgseekiyisnepvqfvgkvsyn > 8qlp_J interface=192,272,273, mkeliyihepnilfangqkcadprdglalfgpftkiygiksgvvgtqyglsifknyinhiqkpiynannitrpmfpgfeavfgckwdadnvvfkevtkeeiekilytesnhkrtydlvslfinkiitanknedekvdvwflvipdeiyqycraqfhdqlkarllehtiptqilrestlawrdfknkfgapkRdfskieghlawtistaafykaggkpwklsdirsgvcylglvykqiepknaccaaqmfldngdgtvfkgevgpwynqekhEFhlnpkeakalltqalnsykeqngvfpkeifihaktkfngqewnafqevtpegtnlvgvtitktkplklfksegnypimrgnafivnersaflwtvgyvpktestlsmevpnpifieinkgeadieqvlkdvlaltklnynaciyadgvpvtlrfadkigeiltastelkapplafkyyi
interface signature	RHR/REF

Estimated binding specificities ?

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# IC=6.373 IC/col=0.490 n_of_columns=13

specificity:

A |  96   8  24  24  17  24  24  24   0   0  17  24   0
C |   0   0  24  24  17  24  24  24   0  96  52  24   0
G |   0  78  24  24  19  24  24  24  96   0  17  24   0
T |   0  10  24  24  43  24  24  24   0   0  10  24  96

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updated Thu Jan 8 07:57:33 2026