8r3g_ABCD : 3D-footprint complex

structure name	CENTRAL GLYCOLYTIC GENES REGULATOR (CGGR) BOUND TO DNA OPERATOR
experiment	NMR
structural superfamily	NagB/RpiA/CoA transferase-like;"Winged helix" DNA-binding domain;
reference complex	8r3g_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8r3g_A interface=37,38,48,49,52, mnqliqaqkkllpdlllvmqkrfeilqyirltepigRRslsaslgisERvlRgevqflkeqnlvdiktngmtlteegyellsvledtmkdvlgltllektlkerlnlkdaiivsgdsdqspwvkkemgraavacmkkrfsgknivavtggttieavaemmtpdsknrellfvpargglgknqanticahmaekasgtyrllfvpgqlsqgayssiieepsvkevlntiksasmlvhgigeaktmaqrrntpledlkkiddndavteafgyyfnadgevvhkvhsvgmqlddidaipdiiavaggsskaeaieayfkkprntvlvtdegaakkllr > 8r3g_B interface=37,38,49,52, mnqliqaqkkllpdlllvmqkrfeilqyirltepigRRslsaslgiseRvlRgevqflkeqnlvdiktngmtlteegyellsvledtmkdvlgltllektlkerlnlkdaiivsgdsdqspwvkkemgraavacmkkrfsgknivavtggttieavaemmtpdsknrellfvpargglgknqanticahmaekasgtyrllfvpgqlsqgayssiieepsvkevlntiksasmlvhgigeaktmaqrrntpledlkkiddndavteafgyyfnadgevvhkvhsvgmqlddidaipdiiavaggsskaeaieayfkkprntvlvtdegaakkllr > 8r3g_C interface=37,49,52, mnqliqaqkkllpdlllvmqkrfeilqyirltepigRrslsaslgiseRvlRgevqflkeqnlvdiktngmtlteegyellsvledtmkdvlgltllektlkerlnlkdaiivsgdsdqspwvkkemgraavacmkkrfsgknivavtggttieavaemmtpdsknrellfvpargglgknqanticahmaekasgtyrllfvpgqlsqgayssiieepsvkevlntiksasmlvhgigeaktmaqrrntpledlkkiddndavteafgyyfnadgevvhkvhsvgmqlddidaipdiiavaggsskaeaieayfkkprntvlvtdegaakkllr > 8r3g_D interface=37,38,48,49,52, mnqliqaqkkllpdlllvmqkrfeilqyirltepigRRslsaslgisERvlRgevqflkeqnlvdiktngmtlteegyellsvledtmkdvlgltllektlkerlnlkdaiivsgdsdqspwvkkemgraavacmkkrfsgknivavtggttieavaemmtpdsknrellfvpargglgknqanticahmaekasgtyrllfvpgqlsqgayssiieepsvkevlntiksasmlvhgigeaktmaqrrntpledlkkiddndavteafgyyfnadgevvhkvhsvgmqlddidaipdiiavaggsskaeaieayfkkprntvlvtdegaakkllr
interface signature	RRERR/RRRR/RRR/RRERR

Estimated binding specificities ?

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# IC=28.720 IC/col=0.736 n_of_columns=39

specificity:

A |   6   0   0   0  96   0  96  24  24  24  24  24  24   0   0   0   0   6  24  24  24  78   0   0  90   0  24  24  24  24  24  24   6   0   0   0   0   0   0
C |  78   0   0   0   0  90   0  24  24  24  24  24  24   0   6  96  96  78  24  24  24   6   0   0   0  96  24  24  24  24  24  24  78   0   0  96  96  96   0
G |   6   0  96  96   0   6   0  24  24  24  24  24  24  96   0   0   0   6  24  24  24   6   0  96   6   0  24  24  24  24  24  24   6  96   0   0   0   0  96
T |   6  96   0   0   0   0   0  24  24  24  24  24  24   0  90   0   0   6  24  24  24   6  96   0   0   0  24  24  24  24  24  24   6   0  96   0   0   0   0

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updated Mon Dec 16 09:12:47 2024