8r3g_D : 3D-footprint complex

structure name	CENTRAL GLYCOLYTIC GENES REGULATOR (CGGR) BOUND TO DNA OPERATOR
experiment	NMR
structural superfamily	NagB/RpiA/CoA transferase-like;"Winged helix" DNA-binding domain;
sequence family	Putative sugarbinding domain;
multimeric complexes	8r3g_ABCD
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8r3g_D interface=37,38,48,49,52, mnqliqaqkkllpdlllvmqkrfeilqyirltepigRRslsaslgisERvlRgevqflkeqnlvdiktngmtlteegyellsvledtmkdvlgltllektlkerlnlkdaiivsgdsdqspwvkkemgraavacmkkrfsgknivavtggttieavaemmtpdsknrellfvpargglgknqanticahmaekasgtyrllfvpgqlsqgayssiieepsvkevlntiksasmlvhgigeaktmaqrrntpledlkkiddndavteafgyyfnadgevvhkvhsvgmqlddidaipdiiavaggsskaeaieayfkkprntvlvtdegaakkllr
interface signature	RRERR

Estimated binding specificities ?

readout + contact

# IC=7.303 IC/col=1.043 n_of_columns=7

specificity:

A |  16   0   0   0  96   0  96
C |  48   0   0   0   0  64   0
G |  16   0  96  96   0  16   0
T |  16  96   0   0   0  16   0

scan!

Dendrogram of similar interfaces ?

matrix format

  
  --DCLT--AGTTRG--RG--------   L                           +5h3r_A    
                                           +---------------1 
  ------------RCYG----KT----          +----2               +2acj_B    
                                      !    ! 
  ----RGSTRTSTHG------------   L   +--3    +---------------3zpl_B    
                                   !  ! 
  --------------YG----------     --4  +--------------------3eyi_B    
                                   ! 
  TT----KATTQTTGLTRTKA--FTYT   L   +-----------------------2p7c_B

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updated Sun Jan 11 01:08:34 2026