8r3g_D : 3D-footprint complex

structure name	CENTRAL GLYCOLYTIC GENES REGULATOR (CGGR) BOUND TO DNA OPERATOR
experiment	NMR
structural superfamily	NagB/RpiA/CoA transferase-like;"Winged helix" DNA-binding domain;
sequence family	Putative sugarbinding domain;
multimeric complexes	8r3g_ABCD
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8r3g_D interface=37,38,48,49,52, mnqliqaqkkllpdlllvmqkrfeilqyirltepigRRslsaslgisERvlRgevqflkeqnlvdiktngmtlteegyellsvledtmkdvlgltllektlkerlnlkdaiivsgdsdqspwvkkemgraavacmkkrfsgknivavtggttieavaemmtpdsknrellfvpargglgknqanticahmaekasgtyrllfvpgqlsqgayssiieepsvkevlntiksasmlvhgigeaktmaqrrntpledlkkiddndavteafgyyfnadgevvhkvhsvgmqlddidaipdiiavaggsskaeaieayfkkprntvlvtdegaakkllr
interface signature	RRERR

Estimated binding specificities ?

readout + contact

# IC=7.303 IC/col=1.043 n_of_columns=7

specificity:

A |  16   0   0   0  96   0  96
C |  48   0   0   0   0  64   0
G |  16   0  96  96   0  16   0
T |  16  96   0   0   0  16   0

scan!

Dendrogram of similar interfaces ?

matrix format

  
  --DCLT--AG--TTRG--RG--------   L         +-----------------------------5h3r_A    
                                         +-1 
  ----RGSTRT--STHG------------   L     +-2 +-----------------------------3zpl_B    
                                       ! ! 
  TT----KATT--QTTGLTRTKA--FTYT   L   +-3 +-----------------------------2p7c_B    
                                     ! ! 
  ----------------YG----------     --4 +-----------------------------3eyi_B    
                                     ! 
  ----PTPG--TT----------HG----   L   +-----------------------------7d98_Q

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updated Sat Sep 14 11:52:05 2024