interface graph thumbnail
legend  pdf

structure nameCENTRAL GLYCOLYTIC GENES REGULATOR (CGGR) BOUND TO DNA OPERATOR
experimentNMR
structural superfamilyNagB/RpiA/CoA transferase-like;"Winged helix" DNA-binding domain;
sequence familyPutative sugarbinding domain;
multimeric complexes8r3g_ABCD
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRRERR

Estimated binding specificities ?

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# IC=6.672 IC/col=0.953 n_of_columns=7 specificity:   
A |  11   9   0   0   0  96   9
C |   9   9   0  96  96   0   9
G |   9  67   0   0   0   0  69
T |  67  11  96   0   0   0   9
scan!

Dendrogram of similar interfaces ?

matrix format
  
  --DCLT--AG--TTRG--RG--------   L         +-----------------------------5h3r_A    
                                         +-1 
  ----RGSTRT--STHG------------   L     +-2 +-----------------------------3zpl_B    
                                       ! ! 
  TT----KATT--QTTGLTRTKA--FTYT   L   +-3 +-----------------------------2p7c_B    
                                     ! ! 
  ----------------YG----------     --4 +-----------------------------3eyi_B    
                                     ! 
  ----PTPG--TT----------HG----   L   +-----------------------------7d98_Q    
                                   

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updated Mon Aug 4 02:02:31 2025