8r7y_BC : 3D-footprint complex

structure name	DEOXYRIBONUCLEOSIDE REGULATOR DEOR IN COMPLEX WITH THE DNA OPERATOR
reference	Soltysova et al. 'Nucleic 52 7305 2024
source	Bacillus subtilis subsp. subtilis str. 168
experiment	X-ray (resolution=3.70, R-factor=?)
structural superfamily	NagB/RpiA/CoA transferase-like;Sigma3 and sigma4 domains of RNA polymerase sigma factors;
reference complex	8r7y_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8r7y_B interface=32,33,34,35,37,38, drekqqlsieaarlyyqsdysqqqiaeqlniSRPTvSRllqyakekgyvqirvmdpfedldalgsileekyglleahvvfsptpdyagithdlsrygaeymhetvkdgdivgvswgttmyqiaqnmqpkqvkgvevvqlkggishsrvntysaetiqlfaeafqtmprylplpvvfdnadvkrmvekdrhieriiemgkqanialftvgtvrdeallfrlgyfneeekallkkqavgdicsrffdakgnicssaindrtigvelqdlrlkersilvaggsrkvssihgaltgkyanvliidqhtaralvnd > 8r7y_C interface=23,33,34,35,36,38,39, tdrekqqlsieaarlyyqsdysQqqiaeqlniSRPTvSRllqyakekgyvqirvmdpfedldalgsileekyglleahvvfsptpdyagithdlsrygaeymhetvkdgdivgvswgttmyqiaqnmqpkqvkgvevvqlkggishsrvntysaetiqlfaeafqtmprylplpvvfdnadvkrmvekdrhieriiemgkqanialftvgtvrdeallfrlgyfneeekallkkqavgdicsrffdakgnicssaindrtigvelqdlrlkersilvaggsrkvssihgaltgkyanvliidqhtaralvnd
interface signature	SRPTSR/QSRPTSR

Estimated binding specificities ?

readout + contact

# IC=10.630 IC/col=0.354 n_of_columns=30

specificity:

A |   0  67  96   0  96  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0  11  11   0
C |   0  11   0  96   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0   9   9  96
G |  96   9   0   0   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0  96   9   9   0
T |   0   9   0   0   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  96   0  67  67   0

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updated Mon Dec 16 09:14:24 2024