8rbx_M : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	STRUCTURE OF INTEGRATOR-PP2A BOUND TO A PAUSED RNA POLYMERASE II-DSIF- NELF-NUCLEOSOME COMPLEX
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	7unc_ABabcdefgh 7und_ABEZabdefgh 8gxq_ABCDEFGHPQs 8gxs_ABCDEFGHPQ
redundant complexes	7unc 7und 8a3y 8bvw 8byq 8bz1 8gxq 8gxs
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8rbx_M interface=39, tvalreirryqkstellirklpfqrlvreiaqdfktdlRfqssavmalqeaseaylvglledtnlcaihakrvtimpkdiqlarrirger

  
  ------RT--                      +-----------------------------7zs9_e    
                                +-4 
  ------RG--                  +-5 +-----------------------------7ccr_A    
                              ! ! 
  LA----RG--                +-6 +-----------------------------7unc_a    
                            ! ! 
  ------RG--              +-7 +-----------------------------6iy2_A    
                          ! ! 
  LT----RC--            +-8 +-----------------------------3kwq_E    
                        ! ! 
  LT----RC--          +-9 +-----------------------------4xzq_E    
                      ! ! 
  QC----RG--       +-10 +-----------------------------7y7i_E    
                   !  !  
  --------KG       !  +-----------------------------7nkx_f    
                   !  
  ------RC--     -11                          +--7xyf_B    
                   !            +-------------1 
  ------RT--       !        +---2             +--7kbd_C    
                   !        !   ! 
  --IT------       +--------3   +----------------3wkj_D    
                            ! 
  ----KT----   L            +--------------------7cvo_A

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updated Sat Sep 14 11:53:10 2024