Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameSTRUCTURE OF INTEGRATOR-PP2A BOUND TO A PAUSED RNA POLYMERASE II-DSIF- NELF-NUCLEOSOME COMPLEX
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes7unc_ABabcdefgh 7und_ABEZabdefgh 8gxq_ABCDEFGHPQs 8gxs_ABCDEFGHPQ
redundant complexes7unc 7und 8a3y 8bvw 8byq 8bz1 8gxq 8gxs
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  ------RT------                                                  +7zs9_e    
                                                   +--------------1 
  ------RT------                                   !              +8grq_A    
                                                 +-8 
  ------RG------                                 ! !              +7ccr_A    
                                                 ! +--------------2 
  LC----RT------                            +---10                +8hr1_E    
                                            !    !  
  LA----RG------                            !    !      +---------7unc_a    
                                            !    +------6 
  --------RA----                            !           +---------6g0l_D    
                                            !  
  QC----RG------                            !              +---------7y7i_E    
                                      +----13     +--------7 
  ------RG------                      !     !     !        +---------5x0y_G    
                                      !     !     !  
  ----------KG--                      !     !  +-11                   +7nkx_f    
                                      !     !  !  !                 +-3 
  ------RA------                      !     !  !  !  +--------------4 +1zla_C    
                                      !     !  !  !  !              ! 
  ------RG------                   +-14     !  !  +--9              +8jla_C    
                                   !  !     +-12     ! 
  ------RC------                   !  !        !     !            +--7xyf_B    
                                   !  !        !     +------------5 
  ------RG------                   !  !        !                  +--8ox0_C    
                                +-15  !        !  
  ------RA----RA                !  !  !        +-------------------6a5l_g    
                                !  !  !  
  ------RT------             +-16  !  +---------------------------7kbd_C    
                             !  !  !  
  --IT----------             !  !  +---------------------------3wkj_D    
                          +-17  !  
  ----KT--------   L      !  !  +---------------------------7cvo_A    
                       +-18  !  
  LT----RC------       !  !  +-----------------------------3kwq_E    
                     -19  !  
  ------RG------       !  +-----------------------------6iy2_A    
                       !  
  LT----RC------       +-----------------------------4xzq_E    
                     

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updated Wed Dec 18 19:21:23 2024