8sjd_AC : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF THE HERMES TRANSPOSASE BOUND TO TWO RIGHT-ENDS OF ITS DNA TRANSPOSON.
experiment	NMR
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8sjd_A interface=238,295,442,445, relktvsadckkeaiekcaqwvvrdcrpfsavsgsgfidmikffikvgaeygehvnveellpspitlsrkvtsdakekkalisreiksavekdgasatidlwtdnyikrnflgvtlhyhennelrdlilglksldferstaeniykklkaifsqfnvedlssikfvtdrganvvkslannirincsshllsnvlensfeetpelnmpilacknivkyfkkanlqhrlrsslksecptRwnstytmlrsildnwesviqilseagetqrivhinksiiqtmvnildgferifkelQtcsspslcfvvpsilkvkeicspdvgdvadiaklkvniiknvriiweenlsiwhytafffyppalhmqqekvaqikefclskmedlelinpvcpsdefefyrkeivilsedfkvmewwnlnskkypklsklalsllsipassaaseRtfSlagniitekrnrigqqtvdsllflnsfyknfck > 8sjd_C interface=65,66,450,452,453, relktvsadckkeaiekcaqwvvrdcrpfsavsgsgfidmikffikvgaeygehvnveellpspITlsrkvtsdakekkalisreiksavekdgasatidlwtdnyikrnflgvtlhyhennelrdlilglksldferstaeniykklkaifsqfnvedlssikfvtdrganvvkslannirincsshllsnvlensfeetpelnmpilacknivkyfkkanlqhrlrsslksecptrwnstytmlrsildnwesviqilseagetqrivhinksiiqtmvnildgferifkelqtcsspslcfvvpsilkvkeicspdvgdvadiaklkvniiknvriiweenlsiwhytafffyppalhmqqekvaqikefclskmedlevcpsdefefyrkeivilsedfkvmewwnlnskkypklsklalsllsipassaasertfslagniiteKrNRigqqtvdsllflnsfyknfck
interface signature	RQRS/ITKNR

Estimated binding specificities ?

readout + contact

# IC=0.614 IC/col=0.013 n_of_columns=46

specificity:

A |  52  16  27  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  21  24  22  36  25  42  20  39  24  24
C |  14  14  22  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  31  24  22  20  22  18  20  19  24  24
G |  16  52  22  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  23  24  22  20  27  18  22  19  24  24
T |  14  14  25  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  21  24  30  20  22  18  34  19  24  24

scan!

home
updated Mon Dec 18 02:58:24 2023