8sjd_AC : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF THE HERMES TRANSPOSASE BOUND TO TWO RIGHT-ENDS OF ITS DNA TRANSPOSON.
experiment	NMR
structural superfamily	Ribonuclease H-like;Hermes dimerisation domain;beta-beta-alpha zinc fingers;
reference complex	8edg_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8sjd_A interface=238,295,442,445, relktvsadckkeaiekcaqwvvrdcrpfsavsgsgfidmikffikvgaeygehvnveellpspitlsrkvtsdakekkalisreiksavekdgasatidlwtdnyikrnflgvtlhyhennelrdlilglksldferstaeniykklkaifsqfnvedlssikfvtdrganvvkslannirincsshllsnvlensfeetpelnmpilacknivkyfkkanlqhrlrsslksecptRwnstytmlrsildnwesviqilseagetqrivhinksiiqtmvnildgferifkelQtcsspslcfvvpsilkvkeicspdvgdvadiaklkvniiknvriiweenlsiwhytafffyppalhmqqekvaqikefclskmedlelinpvcpsdefefyrkeivilsedfkvmewwnlnskkypklsklalsllsipassaaseRtfSlagniitekrnrigqqtvdsllflnsfyknfck > 8sjd_C interface=65,66,450,452,453, relktvsadckkeaiekcaqwvvrdcrpfsavsgsgfidmikffikvgaeygehvnveellpspITlsrkvtsdakekkalisreiksavekdgasatidlwtdnyikrnflgvtlhyhennelrdlilglksldferstaeniykklkaifsqfnvedlssikfvtdrganvvkslannirincsshllsnvlensfeetpelnmpilacknivkyfkkanlqhrlrsslksecptrwnstytmlrsildnwesviqilseagetqrivhinksiiqtmvnildgferifkelqtcsspslcfvvpsilkvkeicspdvgdvadiaklkvniiknvriiweenlsiwhytafffyppalhmqqekvaqikefclskmedlevcpsdefefyrkeivilsedfkvmewwnlnskkypklsklalsllsipassaasertfslagniiteKrNRigqqtvdsllflnsfyknfck
interface signature	RQRS/ITKNR

Estimated binding specificities ?

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# IC=5.501 IC/col=0.125 n_of_columns=44

specificity:

A |   7  49   2  24  18  24  24  18  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0
C |   2  18   2  24  12  24  24  15  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  96   0
G |   2  14   2  24   7  24  24  61  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0
T |  85  15  90  24  59  24  24   2  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0  96

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updated Thu Jan 8 09:19:22 2026