8sjd_BD : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF THE HERMES TRANSPOSASE BOUND TO TWO RIGHT-ENDS OF ITS DNA TRANSPOSON.
experiment	NMR
structural superfamily	Ribonuclease H-like;Hermes dimerisation domain;beta-beta-alpha zinc fingers;
reference complex	8edg_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8sjd_B interface=238,440,444, relktvsadckkeaiekcaqwvvrdcrpfsavsgsgfidmikffikvgaeygehvnveellpspitlsrkvtsdakekkalisreiksavekdgasatidlwtdnyikrnflgvtlhyhennelrdlilglksldferstaeniykklkaifsqfnvedlssikfvtdrganvvkslannirincsshllsnvlensfeetpelnmpilacknivkyfkkanlqhrlrsslksecptRwnstytmlrsildnwesviqilseagetqrivhinksiiqtmvnildgferifkelqtcsspslcfvvpsilkvkeicspdvgdvadiaklkvniiknvriiweenlsiwhytafffyppalhmqqekvaqikefclskmedlelipvcpsdefefyrkeivilsedfkvmewwnlnskkypklsklalsllsipassaasErtfSlagniitekrnrigqqtvdsllflnsfyknfck > 8sjd_D interface=65,455,458, relktvsadckkeaiekcaqwvvrdcrpfsavsgsgfidmikffikvgaeygehvnveellpspItlsrkvtsdakekkalisreiksavekdgasatidlwtdnyikrnflgvtlhyhennelrdlilglksldferstaeniykklkaifsqfnvedlssikfvtdrganvvkslannirincsshllsnvlensfeetpelnmpilacknivkyfkkanlqhrlrsslksecptrwnstytmlrsildnwesviqilseagetqrivhinksiiqtmvnildgferifkelqtcsspslcfvvpsilkvkeicspdvgdvadiaklkvniiknvriiweenlsiwhytafffyppalhmqqekvaqikefclskmedlesreppvcpsdefefyrkeivilsedfkvmewwnlnskkypklsklalsllsipassaasertfslagniiteKrnRigqqtvdsllflnsfyknfck
interface signature	RES/IKR

Estimated binding specificities ?

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# IC=5.582 IC/col=0.124 n_of_columns=45

specificity:

A |  96  12  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  60   0  96  96
C |   0  12  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  12   0   0   0
G |   0  60  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  12  12   0   0
T |   0  12  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  12  84   0   0

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updated Fri Aug 1 17:13:34 2025