8ssq_A : 3D-footprint complex

structure name	ZNFS 3-11 OF CCCTC-BINDING FACTOR (CTCF) COMPLEXED WITH 35MER DNA 35- 4 (Transcriptional repressor CTCF)
reference	Horton et al. 'Nucleic 51 8447 2023
source	Homo sapiens
experiment	X-ray (resolution=3.12, R-factor=0.241)
structural superfamily	beta-beta-alpha zinc fingers;
sequence family	Zinc finger, C2H2 type;
redundant complexes	8ssr_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8ssq_A interface=15,18,21,25,44,46,47,50,74,75,78,100,103,130,132,133,136,188,190,191,194,216,218,219,247,248,250, trphkcpdcdmafvTsgElvRhrrYkhthekpfkcsmcdyasvEvSKlkRhirshtgerpfqcslcsyasrdtYKlkRhmrthsgekpyecyicharftQsgTmkmhilqkhtenvakfhcphcdtviaRkSDlgVhlrkqhsyieqgkkcrycdavfheryaliqhqkshknekrfkcdqcdyacrQeRHmiMhkrthtgekpyacshcdktfrQkQLldmhfkryhdpnfvpaafvcskcgktfTRrNtmarhadnca
interface signature	TERYESKRYKRQTRSDVQRHMQQLTRN

Estimated binding specificities ?

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# IC=25.215 IC/col=0.813 n_of_columns=31

specificity:

A |   4   0   0  77   4   0  77   0  14  24  24  24  24  24  24  24  24   7   0  96   2   0  96   0   0   5   0   0   0   0   4
C |   5   0   5   7  10   0   4  96  81  24  24  24  24  24  24  24  24  79  96   0   3  96   0   0   0   0   0   0  79   0  82
G |   4  96   0   6  12   0  11   0   1  24  24  24  24  24  24  24  24   6   0   0  89   0   0  96  96  91  96  96   1  96   6
T |  83   0  91   6  70  96   4   0   0  24  24  24  24  24  24  24  24   4   0   0   2   0   0   0   0   0   0   0  16   0   4

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updated Sat Sep 14 12:03:40 2024