8ssq_A : 3D-footprint complex

structure name	ZNFS 3-11 OF CCCTC-BINDING FACTOR (CTCF) COMPLEXED WITH 35MER DNA 35- 4 (Transcriptional repressor CTCF)
reference	Horton et al. 'Nucleic 51 8447 2023
source	Homo sapiens
experiment	X-ray (resolution=3.12, R-factor=0.241)
structural superfamily	beta-beta-alpha zinc fingers;
sequence family	Zinc finger, C2H2 type;
redundant complexes	8ssr_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8ssq_A interface=15,18,21,25,44,46,47,50,74,75,78,100,103,130,132,133,136,188,190,191,194,216,218,219,247,248,250, trphkcpdcdmafvTsgElvRhrrYkhthekpfkcsmcdyasvEvSKlkRhirshtgerpfqcslcsyasrdtYKlkRhmrthsgekpyecyicharftQsgTmkmhilqkhtenvakfhcphcdtviaRkSDlgVhlrkqhsyieqgkkcrycdavfheryaliqhqkshknekrfkcdqcdyacrQeRHmiMhkrthtgekpyacshcdktfrQkQLldmhfkryhdpnfvpaafvcskcgktfTRrNtmarhadnca
interface signature	TERYESKRYKRQTRSDVQRHMQQLTRN

Estimated binding specificities ?

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# IC=28.501 IC/col=0.919 n_of_columns=31

specificity:

A |   0   0   0   0   0   0   0   0   0   0   0  13   0   0  24  24  24  24  24  24  24  24   0   0  13  96   0   0   0   0  96
C |   0  96   0  96  96  96  96  96   0   0  96  13   0   0  24  24  24  24  24  24  24  24   0   0  13   0  96   0   0  96   0
G |  96   0  96   0   0   0   0   0   0  96   0  13  96  96  24  24  24  24  24  24  24  24  96  96  13   0   0   0  96   0   0
T |   0   0   0   0   0   0   0   0  96   0   0  57   0   0  24  24  24  24  24  24  24  24   0   0  57   0   0  96   0   0   0

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updated Wed Dec 18 19:31:29 2024