8ssq_A : 3D-footprint complex

structure name	ZNFS 3-11 OF CCCTC-BINDING FACTOR (CTCF) COMPLEXED WITH 35MER DNA 35- 4 (Transcriptional repressor CTCF)
reference	Horton et al. 'Nucleic 51 8447 2023
source	Homo sapiens
experiment	X-ray (resolution=3.12, R-factor=0.241)
structural superfamily	beta-beta-alpha zinc fingers;
sequence family	Zinc finger, C2H2 type;
multimeric complexes	7w1m_ABDEH
redundant complexes	8ssr
reference complex	7w1m_H
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8ssq_A interface=15,18,21,25,44,46,47,50,74,75,78,100,103,130,132,133,136,188,190,191,194,216,218,219,247,248,250, trphkcpdcdmafvTsgElvRhrrYkhthekpfkcsmcdyasvEvSKlkRhirshtgerpfqcslcsyasrdtYKlkRhmrthsgekpyecyicharftQsgTmkmhilqkhtenvakfhcphcdtviaRkSDlgVhlrkqhsyieqgkkcrycdavfheryaliqhqkshknekrfkcdqcdyacrQeRHmiMhkrthtgekpyacshcdktfrQkQLldmhfkryhdpnfvpaafvcskcgktfTRrNtmarhadnca
interface signature	TERYESKRYKRQTRSDVQRHMQQLTRN

Estimated binding specificities ?

readout + contact

# IC=25.310 IC/col=0.816 n_of_columns=31

specificity:

A |   4   0   1  80   4   0  74   0  16  24  24  24  24  24  24  24  24   6   0  96   3   0  96   0   0   4   0   0   0   0   2
C |   4   0   4   6   6   0   8  96  80  24  24  24  24  24  24  24  24  82  96   0   2  96   0   0   0   0   0   0  76   0  84
G |   4  96   0   4  21   0   8   0   0  24  24  24  24  24  24  24  24   6   0   0  89   0   0  96  96  91  96  96   0  96   4
T |  84   0  91   6  65  96   6   0   0  24  24  24  24  24  24  24  24   2   0   0   2   0   0   0   0   1   0   0  20   0   6

scan!

home
updated Mon Jun 29 11:20:06 2026