8sva_AFGT : 3D-footprint complex

structure name	STRUCTURE OF THE RHODOCOCCUS SP. USK13 DARR-20 BP DNA COMPLEX
reference	'Nat 14 7239 2023 X-RAY DIFFRACTION
experiment	X-ray (resolution=2.96, R-factor=?)
structural superfamily	Homeodomain-like;Tetracyclin repressor-like, C-terminal domain;
reference complex	8sva_T
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8sva_A interface=37,41,42, esdvkgrildaaadafmlrgfanttiddiaddvgatKgliYYhfrskfdiflavyedgmrrvrervepyvgapgtgrqrlvamsvahvenlmidlgyhhvvhqgvrdqastalkvrqrdalaalnelrrdyermfhhvitegiadgslrnvddalatrtllsnlnavdvwyrkiegqtekevhdlasqvvdlliggigat > 8sva_F interface=24,39, dvkgrildaaadafmlrgfanttIddiaddvgatkgliYyhfrskfdiflavyedgmrrvrervepyvgapgtgrqrlvamsvahvenlmidlgyhhvvhqgvrdalkvrqrdalaalnelrrdyermfhhvitegiadgslrnvddalatrtllsnlnavdvwyrkiegqtekevhdlasqvvdlliggigat > 8sva_G interface=36,37,41, esdvkgrildaaadafmlrgfanttiddiaddvgaTKgliYyhfrskfdiflavyedgmrrvrervepyvgapgtgrqrlvamsvahvenlmidlgyhhvvhqgqastalkvrqrdalaalnelrrdyermfhhvitegiadgslrnvddalatrtllsnlnavdvwyrkiegqtekevhdlasqvvdlliggigata > 8sva_T interface=36,37,41,42, esdvkgrildaaadafmlrgfanttiddiaddvgaTKgliYYhfrskfdiflavyedgmrrvrervepyvgapgtgrqrlvamsvahvenlmidlgyhhvvhqgvrdqastalkvrqrdalaalnelrrdyermfhhvitegiadgslrnvddalatrtllsnlnavdvwyrkiegqtekevhdlasqvvdlliggiga
interface signature	KYY/IY/TKY/TKYY

Estimated binding specificities ?

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# IC=9.654 IC/col=0.644 n_of_columns=15

specificity:

A |  70   0  90  15  24  24   0   4  24  31   0   2  24  10   0
C |   2   3   2  69  24  24  96   6  24   3   0  11  24   6  75
G |  20   0   2   4  24  24   0  84  24  60  96   2  24   2   6
T |   4  93   2   8  24  24   0   2  24   2   0  81  24  78  15

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updated Sat Jun 27 19:43:52 2026