8sva_AFGT : 3D-footprint complex

structure name	STRUCTURE OF THE RHODOCOCCUS SP. USK13 DARR-20 BP DNA COMPLEX
reference	'Nat 14 7239 2023 X-RAY DIFFRACTION
experiment	X-ray (resolution=2.96, R-factor=?)
structural superfamily	Homeodomain-like;Tetracyclin repressor-like, C-terminal domain;
reference complex	8sva_T
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8sva_A interface=37,41,42, esdvkgrildaaadafmlrgfanttiddiaddvgatKgliYYhfrskfdiflavyedgmrrvrervepyvgapgtgrqrlvamsvahvenlmidlgyhhvvhqgvrdqastalkvrqrdalaalnelrrdyermfhhvitegiadgslrnvddalatrtllsnlnavdvwyrkiegqtekevhdlasqvvdlliggigat > 8sva_F interface=24,39, dvkgrildaaadafmlrgfanttIddiaddvgatkgliYyhfrskfdiflavyedgmrrvrervepyvgapgtgrqrlvamsvahvenlmidlgyhhvvhqgvrdalkvrqrdalaalnelrrdyermfhhvitegiadgslrnvddalatrtllsnlnavdvwyrkiegqtekevhdlasqvvdlliggigat > 8sva_G interface=36,37,41, esdvkgrildaaadafmlrgfanttiddiaddvgaTKgliYyhfrskfdiflavyedgmrrvrervepyvgapgtgrqrlvamsvahvenlmidlgyhhvvhqgqastalkvrqrdalaalnelrrdyermfhhvitegiadgslrnvddalatrtllsnlnavdvwyrkiegqtekevhdlasqvvdlliggigata > 8sva_T interface=36,37,41,42, esdvkgrildaaadafmlrgfanttiddiaddvgaTKgliYYhfrskfdiflavyedgmrrvrervepyvgapgtgrqrlvamsvahvenlmidlgyhhvvhqgvrdqastalkvrqrdalaalnelrrdyermfhhvitegiadgslrnvddalatrtllsnlnavdvwyrkiegqtekevhdlasqvvdlliggiga
interface signature	KYY/IY/TKY/TKYY

Estimated binding specificities ?

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# IC=10.480 IC/col=0.699 n_of_columns=15

specificity:

A |  67   1  93  26  24  24   0   0  24  26   0   0  24   0   0
C |   1   2   0  55  24  24  96  12  24   0   0  15  24   0  60
G |  28   0   0  13  24  24   0  84  24  70  96   2  24   0  12
T |   0  93   3   2  24  24   0   0  24   0   0  79  24  96  24

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updated Mon Dec 16 10:59:29 2024