8sva_AFGT : 3D-footprint complex

structure name	STRUCTURE OF THE RHODOCOCCUS SP. USK13 DARR-20 BP DNA COMPLEX
reference	'Nat 14 7239 2023 X-RAY DIFFRACTION
experiment	X-ray (resolution=2.96, R-factor=?)
structural superfamily	Homeodomain-like;Tetracyclin repressor-like, C-terminal domain;
reference complex	8sva_T
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8sva_A interface=37,41,42, esdvkgrildaaadafmlrgfanttiddiaddvgatKgliYYhfrskfdiflavyedgmrrvrervepyvgapgtgrqrlvamsvahvenlmidlgyhhvvhqgvrdqastalkvrqrdalaalnelrrdyermfhhvitegiadgslrnvddalatrtllsnlnavdvwyrkiegqtekevhdlasqvvdlliggigat > 8sva_F interface=24,39, dvkgrildaaadafmlrgfanttIddiaddvgatkgliYyhfrskfdiflavyedgmrrvrervepyvgapgtgrqrlvamsvahvenlmidlgyhhvvhqgvrdalkvrqrdalaalnelrrdyermfhhvitegiadgslrnvddalatrtllsnlnavdvwyrkiegqtekevhdlasqvvdlliggigat > 8sva_G interface=36,37,41, esdvkgrildaaadafmlrgfanttiddiaddvgaTKgliYyhfrskfdiflavyedgmrrvrervepyvgapgtgrqrlvamsvahvenlmidlgyhhvvhqgqastalkvrqrdalaalnelrrdyermfhhvitegiadgslrnvddalatrtllsnlnavdvwyrkiegqtekevhdlasqvvdlliggigata > 8sva_T interface=36,37,41,42, esdvkgrildaaadafmlrgfanttiddiaddvgaTKgliYYhfrskfdiflavyedgmrrvrervepyvgapgtgrqrlvamsvahvenlmidlgyhhvvhqgvrdqastalkvrqrdalaalnelrrdyermfhhvitegiadgslrnvddalatrtllsnlnavdvwyrkiegqtekevhdlasqvvdlliggiga
interface signature	KYY/IY/TKY/TKYY

Estimated binding specificities ?

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# IC=10.089 IC/col=0.673 n_of_columns=15

specificity:

A |  69   0  92  24  24  24   0   1  24  52   0   1  24   4   1
C |   1   1   1  71  24  24  96   3  24   1   0  13  24   1  65
G |  23   1   1   0  24  24   0  86  24  40  96   4  24   3  13
T |   3  94   2   1  24  24   0   6  24   3   0  78  24  88  17

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updated Thu Jan 8 10:10:19 2026