8sva_AFGT : 3D-footprint complex

structure name	STRUCTURE OF THE RHODOCOCCUS SP. USK13 DARR-20 BP DNA COMPLEX
reference	'Nat 14 7239 2023 X-RAY DIFFRACTION
experiment	X-ray (resolution=2.96, R-factor=?)
structural superfamily	Homeodomain-like;Tetracyclin repressor-like, C-terminal domain;
reference complex	8sva_T
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8sva_A interface=37,41,42, esdvkgrildaaadafmlrgfanttiddiaddvgatKgliYYhfrskfdiflavyedgmrrvrervepyvgapgtgrqrlvamsvahvenlmidlgyhhvvhqgvrdqastalkvrqrdalaalnelrrdyermfhhvitegiadgslrnvddalatrtllsnlnavdvwyrkiegqtekevhdlasqvvdlliggigat > 8sva_F interface=24,39, dvkgrildaaadafmlrgfanttIddiaddvgatkgliYyhfrskfdiflavyedgmrrvrervepyvgapgtgrqrlvamsvahvenlmidlgyhhvvhqgvrdalkvrqrdalaalnelrrdyermfhhvitegiadgslrnvddalatrtllsnlnavdvwyrkiegqtekevhdlasqvvdlliggigat > 8sva_G interface=36,37,41, esdvkgrildaaadafmlrgfanttiddiaddvgaTKgliYyhfrskfdiflavyedgmrrvrervepyvgapgtgrqrlvamsvahvenlmidlgyhhvvhqgqastalkvrqrdalaalnelrrdyermfhhvitegiadgslrnvddalatrtllsnlnavdvwyrkiegqtekevhdlasqvvdlliggigata > 8sva_T interface=36,37,41,42, esdvkgrildaaadafmlrgfanttiddiaddvgaTKgliYYhfrskfdiflavyedgmrrvrervepyvgapgtgrqrlvamsvahvenlmidlgyhhvvhqgvrdqastalkvrqrdalaalnelrrdyermfhhvitegiadgslrnvddalatrtllsnlnavdvwyrkiegqtekevhdlasqvvdlliggiga
interface signature	KYY/IY/TKY/TKYY

Estimated binding specificities ?

readout + contact

# IC=9.828 IC/col=0.655 n_of_columns=15

specificity:

A |  63   0  94  36  24  24   0   1  24  40   0   1  24   3   3
C |   4   0   0  51  24  24  96   9  24   1   0   8  24   5  71
G |  28   0   1   3  24  24   0  82  24  51  96   7  24   0   9
T |   1  96   1   6  24  24   0   4  24   4   0  80  24  88  13

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updated Thu Sep 12 08:36:53 2024