8sva_AFGT : 3D-footprint complex

structure name	STRUCTURE OF THE RHODOCOCCUS SP. USK13 DARR-20 BP DNA COMPLEX
reference	'Nat 14 7239 2023 X-RAY DIFFRACTION
experiment	X-ray (resolution=2.96, R-factor=?)
structural superfamily	Homeodomain-like;Tetracyclin repressor-like, C-terminal domain;
reference complex	8sva_T
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8sva_A interface=37,41,42, esdvkgrildaaadafmlrgfanttiddiaddvgatKgliYYhfrskfdiflavyedgmrrvrervepyvgapgtgrqrlvamsvahvenlmidlgyhhvvhqgvrdqastalkvrqrdalaalnelrrdyermfhhvitegiadgslrnvddalatrtllsnlnavdvwyrkiegqtekevhdlasqvvdlliggigat > 8sva_F interface=24,39, dvkgrildaaadafmlrgfanttIddiaddvgatkgliYyhfrskfdiflavyedgmrrvrervepyvgapgtgrqrlvamsvahvenlmidlgyhhvvhqgvrdalkvrqrdalaalnelrrdyermfhhvitegiadgslrnvddalatrtllsnlnavdvwyrkiegqtekevhdlasqvvdlliggigat > 8sva_G interface=36,37,41, esdvkgrildaaadafmlrgfanttiddiaddvgaTKgliYyhfrskfdiflavyedgmrrvrervepyvgapgtgrqrlvamsvahvenlmidlgyhhvvhqgqastalkvrqrdalaalnelrrdyermfhhvitegiadgslrnvddalatrtllsnlnavdvwyrkiegqtekevhdlasqvvdlliggigata > 8sva_T interface=36,37,41,42, esdvkgrildaaadafmlrgfanttiddiaddvgaTKgliYYhfrskfdiflavyedgmrrvrervepyvgapgtgrqrlvamsvahvenlmidlgyhhvvhqgvrdqastalkvrqrdalaalnelrrdyermfhhvitegiadgslrnvddalatrtllsnlnavdvwyrkiegqtekevhdlasqvvdlliggiga
interface signature	KYY/IY/TKY/TKYY

Estimated binding specificities ?

readout + contact

# IC=10.459 IC/col=0.697 n_of_columns=15

specificity:

A |  63   0  94  27  24  24   0   0  24  43   0   1  24   1   0
C |   1   0   0  57  24  24  96  11  24   1   0  11  24   1  71
G |  28   0   2  11  24  24   0  85  24  51  96   1  24   1  12
T |   4  96   0   1  24  24   0   0  24   1   0  83  24  93  13

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updated Fri Aug 1 17:55:08 2025