8svd_AFGT : 3D-footprint complex

structure name	STRUCTURE OF M. BAIXIANGNINGIAE DARR-DNA COMPLEX REVEALS NOVEL DIMER- OF-DIMERS DNA BINDING
reference	'Nat 14 7239 2023 X-RAY DIFFRACTION
experiment	X-ray (resolution=3.49, R-factor=?)
structural superfamily	Homeodomain-like;Tetracyclin repressor-like, C-terminal domain;
reference complex	8svd_T
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8svd_A interface=34,35,39,40, dvkgrildaaadafmargfanttiddiadevgaTKgliYYhfrskfdiflavyedgmrrvrervephstapgtghqrleamsiahlenlmtelgyhhvvhqgvrhtalkvrqrdaltalnelrrdyermfrrviaegiadgslrrvdealatrtllsnlnavdvwyrkiegqtgeeirelasqvvdmligglad > 8svd_F interface=24,35,39, dvkgrildaaadafmargfanttIddiadevgatKgliYyhfrskfdiflavyedgmrrvrervephstapgtghqrleamsiahlenlmtelgyhhvvhqgvrhqdstalkvrqrdaltalnelrrdyermfrrviaegiadgslrrvdealatrtllsnlnavdvwyrkiegqtgeeirelasqvvdmligglad > 8svd_G interface=36,37,41,42, epdvkgrildaaadafmargfanttiddiadevgaTKgliYYhfrskfdiflavyedgmrrvrervephstapgtghqrleamsiahlenlmtelgyhhvvhqgdstalkvrqrdaltalnelrrdyermfrrviaegiadgslrrvdealatrtllsnlnavdvwyrkiegqtgeeirelasqvvdmligglad > 8svd_T interface=34,35,39,40, dvkgrildaaadafmargfanttiddiadevgaTKgliYYhfrskfdiflavyedgmrrvrervephstapgtghqrleamsiahlenlmtelgyhhvvhqgvrhqdstalkvrqrdaltalnelrrdyermfrrviaegiadgslrrvdealatrtllsnlnavdvwyrkiegqtgeeirelasqvvdmligglad
interface signature	TKYY/IKY/TKYY/TKYY

Estimated binding specificities ?

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# IC=16.322 IC/col=0.907 n_of_columns=18

specificity:

A |  87   0  96   5  90   0   5  24   2   0  24  87   0   0  87  24   2   2
C |   2   0   0  10   2  96   2  24  81   0  24   2   0   0   2  24  90   2
G |   5  96   0  11   2   0   2  24   2  96  24   5  96   0   2  24   2   2
T |   2   0   0  70   2   0  87  24  11   0  24   2   0  96   5  24   2  90

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updated Fri Aug 1 17:55:33 2025