interface graph thumbnail
legend  pdf

structure nameSTRUCTURE OF M. BAIXIANGNINGIAE DARR-DNA COMPLEX REVEALS NOVEL DIMER- OF-DIMERS DNA BINDING
reference'Nat 14 7239 2023 X-RAY DIFFRACTION
experimentX-ray (resolution=3.49, R-factor=0.268)
structural superfamilyHomeodomain-like;Tetracyclin repressor-like, C-terminal domain;
sequence familyBacterial regulatory proteins, tetR family;
multimeric complexes8svd_AFGT 8svd_EIJK
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureTKYY

Estimated binding specificities ?

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# IC=3.882 IC/col=0.555 n_of_columns=7 specificity:   
A |  75   0  24  24  73   0   1
C |   7   7  24  24   9  96   7
G |   7  67  24  24   7   0   7
T |   7  22  24  24   7   0  81
scan!

Dendrogram of similar interfaces ?

matrix format
  
  ----TTKA--YGYA   L                       +-----8svd_T    
                          +----------------1 
  VT--AGDTTTYTLA   L   +--2                +-----5gpc_B    
                       !  ! 
  VTRG----QTHTHT   L --3  +----------------------5vl9_A    
                       ! 
  ----TTKA--YGYG   L   +-------------------------8sva_T    
                     

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updated Sat Sep 14 12:04:27 2024