interface graph thumbnail
legend  pdf

structure nameSTRUCTURE OF M. BAIXIANGNINGIAE DARR-DNA COMPLEX REVEALS NOVEL DIMER- OF-DIMERS DNA BINDING
reference'Nat 14 7239 2023 X-RAY DIFFRACTION
experimentX-ray (resolution=3.49, R-factor=0.268)
structural superfamilyHomeodomain-like;Tetracyclin repressor-like, C-terminal domain;
sequence familyBacterial regulatory proteins, tetR family;
multimeric complexes8svd_AFGT 8svd_EIJK
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureTKYY

Estimated binding specificities ?

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# IC=3.840 IC/col=0.549 n_of_columns=7 specificity:   
A |  81   0   9  24  24   8   7
C |   8   0   7  24  24  66   9
G |   7  96   7  24  24   0   7
T |   0   0  73  24  24  22  73
scan!

Dendrogram of similar interfaces ?

matrix format
  
  ----TTKA--YGYG   L                            +8sva_T    
                              +-----------------1 
  ----TTKA--YGYA   L   +------2                 +8svd_T    
                       !      ! 
  VT--AGDTTTYTLA   L --3      +-----------------5gpc_B    
                       ! 
  VTRG----QTHTHT   L   +------------------------5vl9_A    
                     

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updated Mon Aug 4 02:13:53 2025