interface graph thumbnail
legend  pdf

structure nameSTRUCTURE OF M. BAIXIANGNINGIAE DARR-DNA COMPLEX REVEALS NOVEL DIMER- OF-DIMERS DNA BINDING
reference'Nat 14 7239 2023 X-RAY DIFFRACTION
experimentX-ray (resolution=3.49, R-factor=0.268)
structural superfamilyHomeodomain-like;Tetracyclin repressor-like, C-terminal domain;
sequence familyBacterial regulatory proteins, tetR family;
multimeric complexes8svd_AFGT 8svd_EIJK
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureTKYY

Estimated binding specificities ?

contactlogo
# IC=3.720 IC/col=0.531 n_of_columns=7 specificity:   
A |  78  12  24  24  78   0   6
C |   6   6  24  24   6  96   6
G |   6  60  24  24   6   0   6
T |   6  18  24  24   6   0  78
scan!

Dendrogram of similar interfaces ?

matrix format
  
  ----TTKA--YGYG   L                            +8sva_T    
                              +-----------------1 
  ----TTKA--YGYA   L   +------2                 +8svd_T    
                       !      ! 
  VT--AGDTTTYTLA   L --3      +-----------------5gpc_B    
                       ! 
  VTRG----QTHTHT   L   +------------------------5vl9_A    
                     

home
updated Wed Dec 18 19:32:32 2024