8svd_EIJK : 3D-footprint complex

structure name	STRUCTURE OF M. BAIXIANGNINGIAE DARR-DNA COMPLEX REVEALS NOVEL DIMER- OF-DIMERS DNA BINDING
reference	'Nat 14 7239 2023 X-RAY DIFFRACTION
experiment	X-ray (resolution=3.49, R-factor=?)
structural superfamily	Homeodomain-like;Tetracyclin repressor-like, C-terminal domain;
reference complex	8svd_T
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8svd_E interface=34,35,39,40, dvkgrildaaadafmargfanttiddiadevgaTKgliYYhfrskfdiflavyedgmrrvrervephstapgtghqrleamsiahlenlmtelgyhhvvhqgvrhqdstalkvrqrdaltalnelrrdyermfrrviaegiadgslrrvdealatrtllsnlnavdvwyrkiegqtgeeirelasqvvdmligglad > 8svd_I interface=24,35,39, dvkgrildaaadafmargfanttIddiadevgatKgliYyhfrskfdiflavyedgmrrvrervephstapgtghqrleamsiahlenlmtelgyhhvvhqgvtalkvrqrdaltalnelrrdyermfrrviaegiadgslrrvdealatrtllsnlnavdvwyrkiegqtgeeirelasqvvdmligglad > 8svd_J interface=34,35,39, dvkgrildaaadafmargfanttiddiadevgaTKgliYyhfrskfdiflavyedgmrrvrervephstapgtghqrleamsiahlenlmtelgyhhvvhqgstalkvrqrdaltalnelrrdyermfrrviaegiadgslrrvdealatrtllsnlnavdvwyrkiegqtgeeirelasqvvdmliggla > 8svd_K interface=34,35,39,40, dvkgrildaaadafmargfanttiddiadevgaTKgliYYhfrskfdiflavyedgmrrvrervephstapgtghqrleamsiahlenlmtelgyhhvvhqgvrhqdstalkvrqrdaltalnelrrdyermfrrviaegiadgslrrvdealatrtllsnlnavdvwyrkiegqtgeeirelasqvvdmligglad
interface signature	TKYY/IKY/TKY/TKYY

Estimated binding specificities ?

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# IC=11.663 IC/col=0.778 n_of_columns=15

specificity:

A |   4  96   0  12  24   0   3  24  66   0   9  24   0  12   0
C |   3   0  96   6  24  96   3  24  11   0   9  24   0  66   0
G |   3   0   0   9  24   0  87  24  13  96   9  24   0   9   0
T |  86   0   0  69  24   0   3  24   6   0  69  24  96   9  96

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updated Thu Jan 8 10:11:16 2026