8svd_EIJK : 3D-footprint complex

structure name	STRUCTURE OF M. BAIXIANGNINGIAE DARR-DNA COMPLEX REVEALS NOVEL DIMER- OF-DIMERS DNA BINDING
reference	'Nat 14 7239 2023 X-RAY DIFFRACTION
experiment	X-ray (resolution=3.49, R-factor=?)
structural superfamily	Homeodomain-like;Tetracyclin repressor-like, C-terminal domain;
reference complex	8svd_T
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8svd_E interface=34,35,39,40, dvkgrildaaadafmargfanttiddiadevgaTKgliYYhfrskfdiflavyedgmrrvrervephstapgtghqrleamsiahlenlmtelgyhhvvhqgvrhqdstalkvrqrdaltalnelrrdyermfrrviaegiadgslrrvdealatrtllsnlnavdvwyrkiegqtgeeirelasqvvdmligglad > 8svd_I interface=24,35,39, dvkgrildaaadafmargfanttIddiadevgatKgliYyhfrskfdiflavyedgmrrvrervephstapgtghqrleamsiahlenlmtelgyhhvvhqgvtalkvrqrdaltalnelrrdyermfrrviaegiadgslrrvdealatrtllsnlnavdvwyrkiegqtgeeirelasqvvdmligglad > 8svd_J interface=34,35,39, dvkgrildaaadafmargfanttiddiadevgaTKgliYyhfrskfdiflavyedgmrrvrervephstapgtghqrleamsiahlenlmtelgyhhvvhqgstalkvrqrdaltalnelrrdyermfrrviaegiadgslrrvdealatrtllsnlnavdvwyrkiegqtgeeirelasqvvdmliggla > 8svd_K interface=34,35,39,40, dvkgrildaaadafmargfanttiddiadevgaTKgliYYhfrskfdiflavyedgmrrvrervephstapgtghqrleamsiahlenlmtelgyhhvvhqgvrhqdstalkvrqrdaltalnelrrdyermfrrviaegiadgslrrvdealatrtllsnlnavdvwyrkiegqtgeeirelasqvvdmligglad
interface signature	TKYY/IKY/TKY/TKYY

Estimated binding specificities ?

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# IC=11.780 IC/col=0.785 n_of_columns=15

specificity:

A |  96   8  96  24  68   0  12  24   4   0  24  60   0   0  92
C |   0   8   0  24   8  96   8  24  84   0  24  12   0   0   4
G |   0  72   0  24   8   0   8  24   4  96  24  12  96   0   0
T |   0   8   0  24  12   0  68  24   4   0  24  12   0  96   0

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updated Thu Sep 12 08:37:39 2024