8svd_EIJK : 3D-footprint complex

structure name	STRUCTURE OF M. BAIXIANGNINGIAE DARR-DNA COMPLEX REVEALS NOVEL DIMER- OF-DIMERS DNA BINDING
reference	'Nat 14 7239 2023 X-RAY DIFFRACTION
experiment	X-ray (resolution=3.49, R-factor=?)
structural superfamily	Homeodomain-like;Tetracyclin repressor-like, C-terminal domain;
reference complex	8svd_T
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8svd_E interface=34,35,39,40, dvkgrildaaadafmargfanttiddiadevgaTKgliYYhfrskfdiflavyedgmrrvrervephstapgtghqrleamsiahlenlmtelgyhhvvhqgvrhqdstalkvrqrdaltalnelrrdyermfrrviaegiadgslrrvdealatrtllsnlnavdvwyrkiegqtgeeirelasqvvdmligglad > 8svd_I interface=24,35,39, dvkgrildaaadafmargfanttIddiadevgatKgliYyhfrskfdiflavyedgmrrvrervephstapgtghqrleamsiahlenlmtelgyhhvvhqgvtalkvrqrdaltalnelrrdyermfrrviaegiadgslrrvdealatrtllsnlnavdvwyrkiegqtgeeirelasqvvdmligglad > 8svd_J interface=34,35,39, dvkgrildaaadafmargfanttiddiadevgaTKgliYyhfrskfdiflavyedgmrrvrervephstapgtghqrleamsiahlenlmtelgyhhvvhqgstalkvrqrdaltalnelrrdyermfrrviaegiadgslrrvdealatrtllsnlnavdvwyrkiegqtgeeirelasqvvdmliggla > 8svd_K interface=34,35,39,40, dvkgrildaaadafmargfanttiddiadevgaTKgliYYhfrskfdiflavyedgmrrvrervephstapgtghqrleamsiahlenlmtelgyhhvvhqgvrhqdstalkvrqrdaltalnelrrdyermfrrviaegiadgslrrvdealatrtllsnlnavdvwyrkiegqtgeeirelasqvvdmligglad
interface signature	TKYY/IKY/TKY/TKYY

Estimated binding specificities ?

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# IC=11.674 IC/col=0.778 n_of_columns=15

specificity:

A |   0  96   0  15  24   0   3  24  68   0  10  24   0  11   0
C |   3   0  96  10  24  96   3  24  12   0  10  24   0  65   0
G |   4   0   0   6  24   0  87  24  10  96  10  24   0  10   0
T |  89   0   0  65  24   0   3  24   6   0  66  24  96  10  96

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updated Mon Dec 16 11:00:24 2024