8tiq_C : 3D-footprint complex

structure name	ISORETICULAR, INTERPENETRATING CO-CRYSTAL OF REPLICATION INITIATOR PROTEIN REPE54 AND SYMMETRICAL EXPANDED DUPLEX (31MER) CONTAINING THE COGNATE REPE54 SEQUENCE AND AN ADDITIONAL G-C RICH SEQUENCE WITH BLUNT ENDS AND 3' TERMINAL PHOSPHATES. (Replication initiation protein)
reference	Slaughter et al.
source	Escherichia coli K-12
experiment	X-ray (resolution=2.45, R-factor=0.224)
structural superfamily	"Winged helix" DNA-binding domain;
sequence family	Initiator Replication protein;
multimeric complexes	2z9o_AB
reference complex	7rva_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8tiq_C interface=56,57,58,60,61,64,94,164,165,167,169,170,173,174,200, nsprivqsndlteaayslsrdqkrmlylfvdqirkshdgiceihvakyaeifgltSAEaSKdiRqalksfagkevvfyyesfpwfikpahspsRglysvhinpylipffigrftqfrlsetkeitnpyamrlyeslcqyrkpdgsgivslkidwiieryqlpqSYqRmPDfrRRflqvcvneinsrtpmrlsyiekkkgRqtthivfsfrdi
interface signature	SAESKRRSYRPDRRR

Estimated binding specificities ?

readout + contact

# IC=7.703 IC/col=0.248 n_of_columns=31

specificity:

A |  24  24  24  24  23  16  13  42  20  18   8  19  24  24  24  24   4   1   2   0  96  12  49  24  16  15  25  24  24  24  24
C |  24  24  24  24  31  19  14  18  22  18   7  38  24  24  24  24   2   2   2  96   0  60  17  24  19  17  27  24  24  24  24
G |  24  24  24  24  21  16  56  18  34  42  74  19  24  24  24  24   2  92   4   0   0  12  15  24  45  15  22  24  24  24  24
T |  24  24  24  24  21  45  13  18  20  18   7  20  24  24  24  24  88   1  88   0   0  12  15  24  16  49  22  24  24  24  24

scan!

home
updated Tue Dec 19 05:00:21 2023