8tir_C : 3D-footprint complex

structure name	ISORETICULAR, INTERPENETRATING CO-CRYSTAL OF REPLICATION INITIATOR PROTEIN REPE54 AND SYMMETRICAL EXPANDED DUPLEX (31MER) CONTAINING THE COGNATE REPE54 SEQUENCE AND AN ADDITIONAL G-C RICH SEQUENCE WITH 1 STICKY BASES AND 5' TERMINAL PHOSPHATES. (Replication initiation protein)
reference	Slaughter et al.
source	Escherichia coli K-12
experiment	X-ray (resolution=3.11, R-factor=0.217)
structural superfamily	"Winged helix" DNA-binding domain;
sequence family	Initiator Replication protein;
multimeric complexes	2z9o_AB
reference complex	7rva_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8tir_C interface=56,57,58,60,61,64,94,164,165,167,169,170,173,174,200, nsprivqsndlteaayslsrdqkrmlylfvdqirkshdgiceihvakyaeifgltSAEaSKdiRqalksfagkevvfyyesfpwfikpahspsRglysvhinpylipffinrftqfrlsetkeitnpyamrlyeslcqyrkpdgsgivslkidwiieryqlpqSYqRmPDfrRRflqvcvneinsrtpmrlsyiekkkgRqtthivfsfrdi
interface signature	SAESKRRSYRPDRRR

Estimated binding specificities ?

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# IC=7.677 IC/col=0.256 n_of_columns=30

specificity:

A |  24  24  24  21  49  18  24  16  10   0   0  96   4  85  24  24  24  24  18  10  18  20  22  14  45  21  24  24  24  24
C |  24  24  24  23  15  42  24  16   8   0   0   0  88   5  24  24  24  24  18  63  42  34  20  54  19  23  24  24  24  24
G |  24  24  24  31  17  18  24  16  70   0  96   0   2   3  24  24  24  24  42  13  18  22  20  14  16  31  24  24  24  24
T |  24  24  24  21  15  18  24  48   8  96   0   0   2   3  24  24  24  24  18  10  18  20  34  14  16  21  24  24  24  24

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updated Tue Dec 19 05:00:35 2023