8tiu_C : 3D-footprint complex

structure name	ISORETICULAR, INTERPENETRATING CO-CRYSTAL OF REPLICATION INITIATOR PROTEIN REPE54 AND SYMMETRICAL EXPANDED DUPLEX (31MER) CONTAINING THE COGNATE REPE54 SEQUENCE AND AN ADDITIONAL G-C RICH SEQUENCE WITH 2 STICKY BASE OVERHANGS AND 3' TERMINAL PHOSPHATES. (Replication initiation protein)
reference	Slaughter et al.
source	Escherichia coli K-12
experiment	X-ray (resolution=3.90, R-factor=0.200)
structural superfamily	"Winged helix" DNA-binding domain;
sequence family	Initiator Replication protein;
multimeric complexes	2z9o_AB
reference complex	7rva_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8tiu_C interface=56,57,58,60,61,64,94,164,165,167,169,170,173,174,200, nsprivqsndlteaayslsrdqkrmlylfvdqirkshdgiceihvakyaeifgltSAEaSKdiRqalksfagkevvfyyesfpwfikpahspsRglysvhinpylipffigrftqfrlsetkeitnpyamrlyeslcqyrkpdgsgivslkidwiieryqlpqSYqRmPDfrRRflqvcvneinsrtpmrlsyiekkkgRqtthivfsfrdit
interface signature	SAESKRRSYRPDRRR

Estimated binding specificities ?

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# IC=7.063 IC/col=0.244 n_of_columns=29

specificity:

A |  24  24  24  24  20  19  14  38  20  18   9  22  24  24  24  24   4   4   2   0  96  11  49  24  18  19  20  24  24
C |  24  24  24  24  34  16  13  20  20  18   9  34  24  24  24  24   7   7   4  96   0  67  15  24  18  16  36  24  24
G |  24  24  24  24  20  16  56  19  36  42  69  20  24  24  24  24   4  81   2   0   0   9  15  24  42  16  20  24  24
T |  24  24  24  24  22  45  13  19  20  18   9  20  24  24  24  24  81   4  88   0   0   9  17  24  18  45  20  24  24

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updated Tue Dec 19 05:01:14 2023