8tiw_C : 3D-footprint complex

structure name	ISORETICULAR, INTERPENETRATING CO-CRYSTAL OF REPLICATION INITIATOR PROTEIN REPE54 AND SYMMETRICAL EXPANDED DUPLEX (31MER) CONTAINING THE COGNATE REPE54 SEQUENCE AND AN ADDITIONAL G-C RICH SEQUENCE WITH BLUNT ENDS AND 3' TERMINAL PHOSPHATES AND CROSSLINKED WITH EDC. (Replication initiation protein)
reference	Slaughter et al.
source	Escherichia coli K-12
experiment	X-ray (resolution=3.11, R-factor=0.201)
structural superfamily	"Winged helix" DNA-binding domain;
sequence family	Initiator Replication protein;
multimeric complexes	2z9o_AB
reference complex	7rva_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8tiw_C interface=54,55,56,58,59,62,92,161,162,164,166,167,170,171,197, sprivqsndlteaayslsrdqkrmlylfvdqirksdgiceihvakyaeifgltSAEaSKdiRqalksfagkevvfyyesfpwfikpahspsRglysvhinpylipffirftqfrlsetkeitnpyamrlyeslcqyrkpdgsgivslkidwiieryqlpqSYqRmPDfrRRflqvcvneinsrtpmrlsyiekkkgRqtthivfsfrdi
interface signature	SAESKRRSYRPDRRR

Estimated binding specificities ?

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# IC=6.144 IC/col=0.198 n_of_columns=31

specificity:

A |  24  24  24  24  25  15  10  34  22  19  12  18  24  24  24  24   7   6   9   2  96   8  49  24  18  15  24  24  24  24  24
C |  24  24  24  24  27  17  13  22  20  19  12  42  24  24  24  24   4   6  11  88   0  72  17  24  18  17  24  24  24  24  24
G |  24  24  24  24  22  15  63  20  34  38  60  18  24  24  24  24   4  78   9   4   0   8  15  24  42  15  24  24  24  24  24
T |  24  24  24  24  22  49  10  20  20  20  12  18  24  24  24  24  81   6  67   2   0   8  15  24  18  49  24  24  24  24  24

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updated Tue Dec 19 05:01:40 2023