8tiw_C : 3D-footprint complex

structure name	ISORETICULAR, INTERPENETRATING CO-CRYSTAL OF REPLICATION INITIATOR PROTEIN REPE54 AND SYMMETRICAL EXPANDED DUPLEX (31MER) CONTAINING THE COGNATE REPE54 SEQUENCE AND AN ADDITIONAL G-C RICH SEQUENCE WITH BLUNT ENDS AND 3' TERMINAL PHOSPHATES AND CROSSLINKED WITH EDC. (Replication initiation protein)
reference	Slaughter et al.
source	Escherichia coli K-12
experiment	X-ray (resolution=3.11, R-factor=0.201)
structural superfamily	"Winged helix" DNA-binding domain;
sequence family	Initiator Replication protein;
multimeric complexes	2z9o_AB
reference complex	8ac8_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8tiw_C interface=54,55,56,58,59,62,92,161,162,164,166,167,170,171,197, sprivqsndlteaayslsrdqkrmlylfvdqirksdgiceihvakyaeifgltSAEaSKdiRqalksfagkevvfyyesfpwfikpahspsRglysvhinpylipffirftqfrlsetkeitnpyamrlyeslcqyrkpdgsgivslkidwiieryqlpqSYqRmPDfrRRflqvcvneinsrtpmrlsyiekkkgRqtthivfsfrdi
interface signature	SAESKRRSYRPDRRR

Estimated binding specificities ?

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# IC=14.840 IC/col=0.707 n_of_columns=21

specificity:

A |  76  12  24   8   0   0   0  88   0  96  24  24  24  24  12   0   4  24  24   4  96
C |   8  72  24  12   0   0   0   4  96   0  24  24  24  24   4  96  92  24  24  88   0
G |   4   4  24   8  96   0  96   4   0   0  24  24  24  24  76   0   0  24  24   4   0
T |   8   8  24  68   0  96   0   0   0   0  24  24  24  24   4   0   0  24  24   0   0

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updated Fri Sep 13 13:47:27 2024