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structure nameISORETICULAR, INTERPENETRATING CO-CRYSTAL OF REPLICATION INITIATOR PROTEIN REPE54 AND SYMMETRICAL EXPANDED DUPLEX (31MER) CONTAINING THE COGNATE REPE54 SEQUENCE AND AN ADDITIONAL G-C RICH SEQUENCE WITH 1 STICKY BASES AND 5' TERMINAL PHOSPHATES AND CROSSLINKED WITH EDC.
(Replication initiation protein)
referenceSlaughter et al.
sourceEscherichia coli K-12
experimentX-ray (resolution=2.91, R-factor=0.200)
structural superfamily"Winged helix" DNA-binding domain;
sequence familyInitiator Replication protein;
multimeric complexes2z9o_AB
reference complex8ac8_C
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSAESKRRSYRPDRRR

Estimated binding specificities ?

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# IC=14.294 IC/col=0.681 n_of_columns=21 specificity:   
A |  92  12  24   9   0   0   0  96   0  96  24  24  24  24   9   0  76  24  24   6  93
C |   0  66  24  12   0   0   0   0  96   0  24  24  24  24   9  96  12  24  24  73   0
G |   3   9  24   9  96   0  96   0   0   0  24  24  24  24  72   0   3  24  24  11   3
T |   1   9  24  66   0  96   0   0   0   0  24  24  24  24   6   0   5  24  24   6   0
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updated Fri Sep 13 13:47:41 2024