8tj1_C : 3D-footprint complex

structure name	ISORETICULAR, INTERPENETRATING CO-CRYSTAL OF REPLICATION INITIATOR PROTEIN REPE54 AND SYMMETRICAL EXPANDED DUPLEX (31MER) CONTAINING THE COGNATE REPE54 SEQUENCE AND AN ADDITIONAL G-C RICH SEQUENCE WITH 2 STICKY BASE OVERHANGS AND 3' TERMINAL PHOSPHATES AND CROSSLINKED WITH EDC. (Replication initiation protein)
reference	Slaughter et al.
source	Escherichia coli K-12
experiment	X-ray (resolution=3.15, R-factor=0.207)
structural superfamily	"Winged helix" DNA-binding domain;
sequence family	Initiator Replication protein;
multimeric complexes	2z9o_AB
reference complex	7rva_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8tj1_C interface=54,55,56,58,59,62,92,162,163,165,167,168,171,172,198, sprivqsndlteaayslsrdqkrmlylfvdqirksdgiceihvakyaeifgltSAEaSKdiRqalksfagkevvfyyesfpwfikpahspsRglysvhinpylipffigrftqfrlsetkeitnpyamrlyeslcqyrkpdgsgivslkidwiieryqlpqSYqRmPDfrRRflqvcvneinsrtpmrlsyiekkkgRqtthivfsfrdi
interface signature	SAESKRRSYRPDRRR

Estimated binding specificities ?

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# IC=7.191 IC/col=0.248 n_of_columns=29

specificity:

A |  24  24  24  49  18  24  16   6   0   0  78   1  74  24  24  24  24  18  13  20  20  19  12  49  20  24  24  24  24
C |  24  24  24  15  42  24  19   6   0   0   6  92   7  24  24  24  24  18  63  38  36  19  60  15  19  24  24  24  24
G |  24  24  24  17  18  24  16  78   0  96   6   2   7  24  24  24  24  42  10  19  20  20  12  17  38  24  24  24  24
T |  24  24  24  15  18  24  45   6  96   0   6   1   8  24  24  24  24  18  10  19  20  38  12  15  19  24  24  24  24

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updated Tue Dec 19 05:02:45 2023