8u72_BC : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF THE SPARTA OLIGOMER WITH GUIDE RNA AND TARGET DNA
experiment	NMR
structural superfamily	Toll/Interleukin receptor TIR domain;Ribonuclease H-like;
reference complex	8ifk_A 8ifk_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8u72_B interface=260,355,359,366, mrnkifishatpedddftrwlslkliglgyevwcdilflddfwstiekeirentckflivsstagnkregvlkelavatkvkkhlqddmfiiplaidenlsyddinieivrlnaidfkkswakglqdlldafekqnvpkkppdhsksnllyqqiflhdkqaiekeetydsnwfpiisfpnelrfhrydwrlpkqfdvrtlafpairykeylctfaweydfihqlpktetyngqesiristsdilsgrydtdfirnyecqRlivqlinkafelrmkdknvreyqmsktfaywiekgklekdkfekiklvgkqknkywhfgisaagklypspvlmvsshiiftmdginliksksiqHssrRkqgknwWndkwrekllafirflsddqnaiylnvgseekilisnkplkffgkmsyvtps > 8u72_C interface=72,190,380, mkeliyieepsilfahgqkctdprdglalfgplnqiygiksgvvgtqkglqifksyldkiqkpiynhnnitRpmfpgfeavfgckwesqnivfkeitdeeirrylfnasthkrtydlvtlfndkiitankndeervdvwfvivpeeiykdaqfhdqlkarllehtiptqilrestlawrdfkntfgapiRdfskieghlawtistaayykaggkpwklgdirpgvcylglvykkieknpqnaccaaqmfldngdgtvfkgevgpwynpekgeyhlkpkeakalltqalesykeqnksypkevfihartrfndeewnafnevtpkntnlvgvtitkskplklyktegafpimrgnayivdekkaflwtlgfvpklqstlsMevpnpifieinkgeaeiqqvlkdilaltklnynaciyadgepvtlrfankigeiltasteiktpplafkyyi
interface signature	RHRW/RRM

Estimated binding specificities ?

contact

# IC=3.777 IC/col=0.270 n_of_columns=14

specificity:

A |   4  67  24  24  24  24  24  24  24  74  19  21   0   7
C |  81   9  24  24  24  24  24  24  24   8  38  33   0  74
G |   4  11  24  24  24  24  24  24  24   7  19  21   0   7
T |   7   9  24  24  24  24  24  24  24   7  20  21  96   8

scan!

home
updated Mon Dec 16 12:24:14 2024