8u72_DE : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF THE SPARTA OLIGOMER WITH GUIDE RNA AND TARGET DNA
experiment	NMR
structural superfamily	Toll/Interleukin receptor TIR domain;Ribonuclease H-like;
reference complex	8ifk_A 8ifk_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8u72_D interface=254,349,360, nkifishatpedddftrwlslkliglgyevwcdilfwstiekeirentckflivsstagnkregvlkelavatkvkkhlqddmfiiplaidenlsyddinieivrlnaidfkkswakglqdlldafekqnvpkkppdhsksnllyqqiflhdkqaiekeetydsnwfpiisfpnelrfhrydwrlpkqfdvrtlafpairykeylctfaweydfihqlpktetyngqesiristsdilsgrydtdfirnyecqRlivqlinkafelrmkdknvreyqmsktfaywiekgklekdkfekiklvgkqknkywhfgisaagklypspvlmvsshiiftmdginliksksiqHssrrkqgknwWndkwrekllafirflsddqnaiylnvgseekilisnkplkffgkmsyvtps > 8u72_E interface=188,380, mkeliyieepsilfahgqkctdprdglalfgplnqiygiksgvvgtqkglqifksyldkiqkpiynhnnitrpmfpgfeavfgckwesqnivfkeitdeeirrylfnasthkrtydlvtlfndkiitankndeervdvwfvivpeeiykqfhdqlkarllehtiptqilrestlawrdfkntfgapiRdfskieghlawtistaayykaggkpwklgdirpgvcylglvykkieksknpqnaccaaqmfldngdgtvfkgevgpwynpekgeyhlkpkeakalltqalesykeqnksypkevfihartrfndeewnafnevtpkntnlvgvtitkskplklyktegafpimrgnayivdekkaflwtlgfvpklqstlsMevpnpifieinkgeaeiqqvlkdilaltklnynaciyadgepvtlrfankigeiltasteiktpplafkyyi
interface signature	RHW/RM

Estimated binding specificities ?

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# IC=3.101 IC/col=0.222 n_of_columns=14

specificity:

A |  16  24  24  24  24  24  24  24  24  96  24  24   0  16
C |  54  24  24  24  24  24  24  24  24   0  24  24   0  54
G |  13  24  24  24  24  24  24  24  24   0  24  24   0  13
T |  13  24  24  24  24  24  24  24  24   0  24  24  96  13

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updated Mon Dec 16 12:23:46 2024