8u72_FG : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF THE SPARTA OLIGOMER WITH GUIDE RNA AND TARGET DNA
experiment	NMR
structural superfamily	Toll/Interleukin receptor TIR domain;Ribonuclease H-like;
reference complex	8ifk_A 8ifk_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8u72_F interface=259,354,365, mrnkifishatpedddftrwlslkliglgyevwcdilfldkgvdfwstiekeirentckflivsstagnkregvlkelavatkvkkhlqddmfiiplaidenlsyddinieivrlnaidfkkswakglqdlldafekqnvpkkpksnllyqqiflhdkqaiekeetydsnwfpiisfpnelrfhrydwrlpkqfdvrtlafpairykeylctfaweydfihqlpktetyngqesiristsdilsgrydtdfirnyecqRlivqlinkafelrmkdknvreyqmsktfaywiekgklekdkfekiklvgkqknkywhfgisaagklypspvlmvsshiiftmdginliksksiqHssrrkqgknwWndkwrekllafirflsddqnaiylnvgseekilisnkplkffgkmsyvtps > 8u72_G interface=72,188, mkeliyieepsilfahgqkctdprdglalfgplnqiygiksgvvgtqkglqifksyldkiqkpiynhnnitRpmfpgfeavfgckwesqnivfkeitdeeirrylfsthkrtydlvtlfndkiitankndeervdvwfvivpeeiykdaqfhdqlkarllehtiptqilrestlawrdfkntfgapiRdfskieghlawtistaayykaggkpwklgdirpgvcylglvykkieknpqnaccaaqmfldngdgtvfkgevgpwynpekgeyhlkpkeakalltqalesykeqnksypkevfihartrfndeewnafnevtpkntnlvgvtitkskplklyktegafpimrgnayivdekkaflwtlgfvpklqstlsmevpnpifieinkgeaeiqqvlkdilaltklnynaciyadgepvtlrfankigeiltasteiktpplafkyyi
interface signature	RHW/RR

Estimated binding specificities ?

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# IC=3.142 IC/col=0.224 n_of_columns=14

specificity:

A |  13  24  24  24  24  24  24  24  24  96  24  24   0  13
C |  57  24  24  24  24  24  24  24  24   0  24  24   0  54
G |  13  24  24  24  24  24  24  24  24   0  24  24   0  13
T |  13  24  24  24  24  24  24  24  24   0  24  24  96  16

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updated Mon Dec 16 12:24:28 2024