8xas_AEF : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF ATARR1-DBD IN COMPLEX WITH A DNA FRAGMENT
reference	Zhou et al. Proc.Natl.Acad.Sci.USA 121 e2319335121 2024
source	Arabidopsis thaliana
experiment	X-ray (resolution=2.35, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	8xas_E
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8xas_A interface=3,43,46,47,50,51, kpRvvwsvelhqqfvaavnqlgvekavpkkilelmnvpgltrEnvAShlQKyriylrrl > 8xas_E interface=3,42,43,46,47,50,51, kpRvvwsvelhqqfvaavnqlgvekavpkkilelmnvpgltREnvAShlQKyriylrrl > 8xas_F interface=4,44,47,48,51,52, kkpRvvwsvelhqqfvaavnqlgvekavpkkilelmnvpgltrEnvAShlQKyriylrrlgg
interface signature	REASQK/RREASQK/REASQK

Estimated binding specificities ?

readout + contact

# IC=16.753 IC/col=1.117 n_of_columns=15

specificity:

A |   0  76   0   6  96   0  90   0   6  96   0  90   0   6  96
C |   0   6   0   6   0   0   0   0   6   0   0   0   0   6   0
G |  96   6   0   8   0  96   6   0   8   0  96   6   0   8   0
T |   0   8  96  76   0   0   0  96  76   0   0   0  96  76   0

scan!

home
updated Mon Dec 16 16:11:38 2024