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structure nameCRYSTAL STRUCTURE OF ATARR1-DBD IN COMPLEX WITH A DNA FRAGMENT
(Two-component response regulator ARR1)
referenceZhou et al. Proc.Natl.Acad.Sci.USA 121 e2319335121 2024
sourceArabidopsis thaliana
experimentX-ray (resolution=2.35, R-factor=0.199)
structural superfamilyHomeodomain-like;
sequence familyMyblike DNAbinding domain;
multimeric complexes8xas_AEF 8xas_BCD
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRREASQK

Estimated binding specificities ?

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# IC=5.766 IC/col=0.961 n_of_columns=6 specificity:   
A |   0  54  96   0   0  13
C |   0  13   0   0  96  16
G |   0  13   0   0   0  13
T |  96  16   0  96   0  54
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Dendrogram of similar interfaces ?

matrix format
  
  RA------IAQTNA------   L                                 +-5ego_B    
                                            +--------------2 
  RT------NT--NAIARG--   L        +---------5              +-1b72_B    
                                  !         ! 
  --RT----NT--NAIARG--   L        !         +----------------4cyc_B    
                                  ! 
  RT----QTVAQTNA------   L        !                          +8osb_E    
                                  !                       +--1 
  --------VTKGNA--KA--   L     +--8              +--------3  +2lkx_A    
                               !  !              !        ! 
  RT------IAQCNAMG----   L     !  !         +----4        +--1b72_A    
                               !  !         !    ! 
  --------NCRG--------   L     !  ! +-------6    +-----------4xrm_B    
                             +-9  ! !       ! 
  RC------IAQCNAYC----   L   ! !  +-7       +----------------3rkq_B    
                             ! !    ! 
  --------VTCCNAQA--RT   L -10 !    +------------------------8g87_X    
                             ! ! 
  ----NG--NA----------   L   ! +-----------------------------2kdz_A    
                             !  
  ----RGDTVTSTRG------   L   +-----------------------------6lxn_A    
                           

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updated Sun Jan 11 01:52:18 2026