8xas_BCD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF ATARR1-DBD IN COMPLEX WITH A DNA FRAGMENT
reference	Zhou et al. Proc.Natl.Acad.Sci.USA 121 e2319335121 2024
source	Arabidopsis thaliana
experiment	X-ray (resolution=2.35, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	8xas_E
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8xas_B interface=3,42,43,46,47,50,51, kpRvvwsvelhqqfvaavnqlgvekavpkkilelmnvpgltREnvAShlQKyriylrrlggv > 8xas_C interface=3,42,43,46,47,50,51, kpRvvwsvelhqqfvaavnqlgvekavpkkilelmnvpgltREnvAShlQKyriylrrlggvs > 8xas_D interface=3,43,46,47,50,51, kpRvvwsvelhqqfvaavnqlgvekavpkkilelmnvpgltrEnvAShlQKyriylrrlg
interface signature	RREASQK/RREASQK/REASQK

Estimated binding specificities ?

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# IC=18.064 IC/col=1.129 n_of_columns=16

specificity:

A |   0  78  96   0   0   0  78  96   0   0   0  78  96   0   0   6
C |   0   6   0   6  96   0   6   0   0  96   0   6   0   6  96  78
G |   0   6   0   0   0   0   6   0   0   0   0   6   0   6   0   6
T |  96   6   0  90   0  96   6   0  96   0  96   6   0  84   0   6

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updated Mon Dec 16 16:11:27 2024