| structure name | ANTENNAPEDIA HOMEODOMAIN-DNA COMPLEX (ANTENNAPEDIA HOMEODOMAIN) |
| reference | Fraenkel et al. Nat.Struct.Biol. 5 692 1998 |
| source | Drosophila melanogaster |
| experiment | X-ray (resolution=2.40, R-factor=0.218) |
| structural superfamily | Homeodomain-like; |
| sequence family | Homeobox domain; |
| redundant complexes | 4xic 4xid 5jlw 5jlx |
| reference complex | 5jlw_D |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RKIQNM |
Estimated binding specificities ?
| readout + contact |  |
A | 8 0 72 96 0 87 8 C | 69 0 8 0 0 0 8 G | 8 0 8 0 0 9 72 T | 11 96 8 0 96 0 8scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: ANTENNAPEDIA | ||
| TATAA | PubMed | 9ant_B(6.65e-03) |
| TTAATT | PubMed | 9ant_B(3.38e-03), 4xid_A(3.37e-03), 4xic_A(1.13e-03) |
Dendrogram of similar interfaces ?
matrix format--------------------------IA--QCNAMG---- L +2r5z_A +-1 --------------------------IA--QTNA----KT L ! +4rdu_A +-------4 --------------------------IA----NA------ ! ! +4qtr_D ! +-2 --------------------------IA----NA------ +--8 +4xrs_G ! ! --------------------------IA--QTNAMC---- L ! ! +--2h1k_B ! ! +-5 --------------------------NC--ICRG------ L +--9 +------6 +--4xrm_B ! ! ! RT------------------------NT----NAIARG-- L ! ! +--4cyc_B ! ! --------------------------TA--QCNAMC---- +-10 ! +4rbo_D ! ! +-----------3 NGRGTG--------LC----LCRG---------------- ! ! +4ofa_A +-11 ! --KA------------SG--AT--YTRG------------ L ! ! +---------------4rb3_D ! ! --------------------------IA--QCNAMC---- L +----12 ! +--------4cyc_A ! ! +---------7 --------IGYGFG-------------------------- ! ! +--------4ztu_A +-13 ! --------------------NTVCECSTYTSTYC------ L ! ! +---------------------5ed4_A -14 ! --QGTGRA--------YC----RG---------------- ! +---------------------------3fsp_A ! ----------------TGKG-------------------- L +-----------------------------4pxi_B |
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updated Fri Sep 13 15:12:16 2024